Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00018 ATGGCTTCGGCGTCTATATTCTCATCGTTAAGGAGGAGGAGGTCGCCTTCATTGGAAGCATTTCTGGCTCCGGTTGACTTGACTGGCGTTGCCCTGGTTCAAACCCTGGCAGCTGTTTCTTCTGATCTTATTTCTCGATTTGCAGACCGGTTTTTCTTTTTTCAGAGGAAGAATTCAAGGTCGCTCATAAGGAAAGTGGAGATTTTTTTGTTGCTTTTGGAGAATTTGAGCGACATGGGTCCGAATTTGCCTCCAACTGCAATGCTTTGTTTGAAGGAGATGTATTTGCTGTTGTATCGGGCTAAGATACTACTTGATTATTGTGCGAAATCTAGTAAGGTATGGCTTTTGCTTCAGAATCATTCGATTTCTGGTCATTTTCATGATCTGAATCAAGAGATATCCACCCTTTTAGATGTATTTCCAATTAAGGGTGTTGAATTGAGTGTGGATATTAGGGAACAGGTTGCACTAATGCAGAAGCAGTCAAGGAGGTCTAAGTTGTTTGTTGATAGAAATGATGAATTACTGAGAACTCAGTTCTTCTCATTTCTCCTTGAATTTGAAAATGGCCGCGTTCCTGATACGAGCGAATTACGGTCATTCTTTATGCAGCAGTTGAGGATTCAGGATGCTAAGAGTTGTAGGAATGAAATTGAGTCTTTGGAGGAGCAGATTGTCAATCATGAGGGAGATGTTGAGCCAACAATCTCAGTGCTTAATGGTTTTGTTGCATTGACAAGGTACTGCAGATTTTTGCTTTTCGGGTTTGAGGAAGACGAACTAGCATTGCAAACTGCAAATCAAAAGAGACCAAAGAAGGGTTTGATCACCCAACAAATTGCAGAGACATTTTTCACTGTTCCAAGCGATTTTTGCTGTCCAATATCATTAGAATTGATGCAAGATCCAGTGATAATATCAACAGGTCAGACATTTGAACGGAGTTCTATAGCTAGGTGGATGGAAGAAGGGCATTGTACTTGCCCGAAAACAGGGCAAATGCTTGCCAACACACGTCTTGTGCCCAATCGTGCACTCAGGAATCTGATTATGCAGTGGTGCACTGCACATGGAATTCCATATGATCCACCGGAGAACATGGATGCGTCTGCTGAAACCTTTGCTACAGCTTCCCCTACAAAAGCTGCCCTTGAAGCAAATAAAGCCACAGCAACCCTTCTCATTCAACAACTAGCAAATGGATCAGAAATTGCCAAGGCTGTAGCTGCTCGTGAAATAAGACTGCTAGCGAAAACCGGGAAAGAAAACCGTGCCTTCATTGCAGAAGCTGGAGCCATTCCTCATCTTCGAAAATTGCTTCCATCTCCAAATCCTATTGCACAGGAGAACTCTGTGACTGCTATGCTCAATCTTTCGATTTATGAGAAAAACAAAAGCCTCATCATGCAAGAGGAAGGTTGTTTAGGATCCATCATTGATGTCCTGAGGTTTGGTCACACAACAGAAGCAAGGGAAAATGCAGCGGCAACATTGTTTAGCCTCTCTGCTGTTCATGACTATAAGAAGATAATTGCAGATGAGAAGGGAGCCATTGAATCCTTGACAGGACTATTGGCTGAGGGAACCTCAAGAGGAAAGAAGGATGCTGTTACTGCTTTATTTAATTTGTCAACACACAGTGAAAATTGTCTAAGAATGATAGAGGCAGGAGCTGTAGCTGCACTTGTATCGGCTTTAGGAAATGAAGGCGTTGCTGAGGAAGCAGCCGGTGCATTAGCCTTGATTGTCAGGCAGTCAATTGGGGCCATTGCAGTAGTAAGGGAGGAAATGGCTGTGGCGAGTTTGATAGGAATGATGCGATGTGGTACACCGAGGGGGAAAGAGAATGCTGTTGCAGCTTTGCTGGAGTTATGCCGGAGTGGGGGAGCAGCAGCAACTGAAACAGTGTTTAGAGCACCAGCTTTGGCTGGTTTGCTCCAGACACTTCTATTTACGGGCACAAAGCGGGCTAGGCGAAAAGCGGCTTCACTTGCTAGGGTGTTTCAGAGATCTGAGCATACATCCATGCATTTTGGTGGAATAGGAATGGGGTATGCGTTTTCTGGTAACTCAAATACAAATAGAGATTCCAGCTTTGCTGGAGATGTTTCAGTACCAATGTCCATTTCTGTACCCGTTTTGTAG 2148 0.4381 MASASIFSSLRRRRSPSLEAFLAPVDLTGVALVQTLAAVSSDLISRFADRFFFFQRKNSRSLIRKVEIFLLLLENLSDMGPNLPPTAMLCLKEMYLLLYRAKILLDYCAKSSKVWLLLQNHSISGHFHDLNQEISTLLDVFPIKGVELSVDIREQVALMQKQSRRSKLFVDRNDELLRTQFFSFLLEFENGRVPDTSELRSFFMQQLRIQDAKSCRNEIESLEEQIVNHEGDVEPTISVLNGFVALTRYCRFLLFGFEEDELALQTANQKRPKKGLITQQIAETFFTVPSDFCCPISLELMQDPVIISTGQTFERSSIARWMEEGHCTCPKTGQMLANTRLVPNRALRNLIMQWCTAHGIPYDPPENMDASAETFATASPTKAALEANKATATLLIQQLANGSEIAKAVAAREIRLLAKTGKENRAFIAEAGAIPHLRKLLPSPNPIAQENSVTAMLNLSIYEKNKSLIMQEEGCLGSIIDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADEKGAIESLTGLLAEGTSRGKKDAVTALFNLSTHSENCLRMIEAGAVAALVSALGNEGVAEEAAGALALIVRQSIGAIAVVREEMAVASLIGMMRCGTPRGKENAVAALLELCRSGGAAATETVFRAPALAGLLQTLLFTGTKRARRKAASLARVFQRSEHTSMHFGGIGMGYAFSGNSNTNRDSSFAGDVSVPMSISVPVL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00018 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Pte18g00018 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Pte18g00018 715 SUPERFAMILY RING/U-box 276 362 - -
Pte18g00018 715 CDD MLKL_NTD 56 166 - -
Pte18g00018 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Pte18g00018 715 Gene3D - 520 674 IPR011989 -
Pte18g00018 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Pte18g00018 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Pte18g00018 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Pte18g00018 715 SMART arm_5 421 461 IPR000225 GO:0005515
Pte18g00018 715 SMART arm_5 547 585 IPR000225 GO:0005515
Pte18g00018 715 SMART arm_5 586 627 IPR000225 GO:0005515
Pte18g00018 715 SMART arm_5 462 504 IPR000225 GO:0005515
Pte18g00018 715 SMART arm_5 505 546 IPR000225 GO:0005515
Pte18g00018 715 Gene3D - 391 519 IPR011989 -
Pte18g00018 715 Coils Coil 212 232 - -
Pte18g00018 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Pte18g00018 715 Gene3D - 54 144 IPR036537 GO:0007166
Pte18g00018 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Pte18g00018 715 PANTHER U BOX DOMAIN-CONTAINING 70 669 - -
Pte18g00018 715 SUPERFAMILY ARM repeat 393 671 IPR016024 -
Pte18g00018 715 FunFam RING-type E3 ubiquitin transferase 364 686 - -
Pte18g00018 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00018 Pte-Chr18 591053 594258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00018 1 716 U-box Gene Family AT1G29340 68.844 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00018 - - mnt:21388341 1102.81