Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00011 ATGACCAGAGCTGTTCGTAATAGGATACTTAAGGATGCAAATGGTGATATTAGTGATCATCTACGCAACCATATTCATTTAACAAATTGTATTCACTTAAAGAACCATATGCACAAACACAGTCCTATACTGGCTGAAAGGTCACTCCTGAGGGATTTGGTTGTCCTTCAGAGGTCACGGTCTTTAAGGGATCCTTCTGCAAGTCCTCCCTCATGGCATTCACCTTCTATGATGGATATGCTTTCCAAGAGAGCTGAAAATGATGGTATTGTTCAGGAGGAAAGAAAGTCAATAGGCATTGAGCGGCAGAAAGATGGCAGGAGATCATCAGGGAGCTCACCTCCTTTTGTTTATTTAGGTCCATCAAAGGTAGTTCCTGGTGAACTTTCCAGAAATAAAGCAACTGGCAATGTGGCAGGCGGTGATCGTAATAACAGGAGTAGACTTGGGGACAGTAAGAAAGTTGGGAGAGAGGATTCTGGCAGGTGTAACAGGAATAACATTTTGGTCAGTTGTAAGGAGCCTCCTCTCAGTCAAGAAGGTAAAGATTCATTCCAAGAAGCAGTGTCAGGGCAGTCCATGTCTACAGAAAGAAAAAGTAGACAAAGAGGCAAGCAAATCCATAATGCTCAAACAAAGAAACTTTCTAAGCAGAAGTCGCATGATGTTCCAATGGACAGTGATGTTGTGGTATCTTCAAACATACATCTTTGTGATAAGTTTCCTCCGCATGGAAAAGCTGTTGAGGAGCCAGAAGGAGGCAGTGTTCGTGGTAAATGCACTGGATTAAATAGGGCGAAAAGGCGCAAATTCCGAAGCGCACGAAGAGCTCGAGCTGCTGCGTCAAGAGATATTGGAGCAGAGAATGAATTGTCTGTGGCTTCCAACTCATTACCTCCAGGGCCTACCCATTGTAAGTATCAAATCGAGGAAGGGGAAGAAGGATATTCTGATCGAAATGTTAGAAATGCACCTAGAAATGGTTGTGGTCTTCCATGGAATTGGTCAATAATTCATGACAGAGGCAAAACATTCTTTGATAAGGCTGGAAGAAGCTTCTCTTGCGGGTTGTCTGATTCTAGGTCAAAGAGAGCAAGTATTGCAGCCAATGGGAAAAACATTTCTGAAATGCCAGTGGCCTCTGACCATTTTGGTTCATCAACTAAATCAGATGCAGAGGCAATGCCACTGCTGATTGAGGCATCTGGATCTCATGAAAGTATGGAAAATGTAGGTTGGGCTCATGATTACTCTGGGGAACTTGGAATATATGCTGATCATTTAATGAAGGATGATATTGATTCTGACTTAGCTTCTGAAGTGAGATTAGGTGATCATCATAAATTTAGATCAAATGGTCACACTAGACACCAAAACCTGACACAAAAGTACATGCCAAAAACGTTTAGAGATATGGTAGGACAGACTTTGGTTGCTCAAGCTCTTACAAATGCAGTAATTAAAAGGAAGGTTGGATTGTTATATGTGTTTTATGGACCCCATGGCACCGGAAAAACATCCTGTGCTCGCATATTTGCTAGAGCTCTTAATTGTCAATCTTCAGAACATCCGAAACCTTGCGGCTTTTGCAATTCTTGCATTGCATATGATTTGGGTAAGAACAGAAATATTAGAGAAGTTGGACCAGTCAGCAATTTTGACTTTGAGAATATCATGGGTTTGTTTGATAACATGATAGTTTCCCAGCTCCCGGCACAGTACAGAGTGTTTATTTTTGATGACTGCGACACTCTGTCTCCTAATAGCTGGAGTGCCATTTCAAAGGTCATAGATAGAGCACCTAGACGTTTGGTTTTTATCCTTGTCAGTTCAAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGCCAGAAATTCTTCTTTCCAAAGCTGAAGGACGCAGATATCATATATACTTTGCAGTGGATTGCATCAAAAGAAGGGCTTGACATTGATAAGGAAGCCTTGAAACTCATTGCATCAAGATCAGATGGATCTTTAAGAGATGCAGAGATGACCCTTGAGCAACTGAGTTTACTCGGGCAGAGAATATCTGTGCCCTTAGTACAAGAATTGGTAGGGCTAATATCTGATGAAAAATTGGTAGATCTCCTTGATTTGGCATTATCAGCTGACACGGTTAACACTGTAAAGAACTTGAGGGTGATAATGGAAACTGGTGTTGAGTCATTAGCTCTGATGTCACAACTAGCTACAGTGATTACCGATATACTAGCTGGTAGTTATGATTTCACAAAAGAAAGGCAGAAAAGGAAGTTTTTCTGCAAACAACCACTATCCAAGGAGGATATGGAAAAGCTCCGGCAAGCTTTGAAAACTTTGTCAGAGGCTGAAAAGCAACTAAGGATGTCAAATGACAAATTAACATGGCTAACAGCTGCATTGCTTCAACTGGCTCCTGATCAGCAATATATGTTGCCCACTTCATCGGATAATAGCTTCAACCATAGTCCCTTGCCCCTAAATAATGCAGCTGGAAGAGATGCAACTCATACGAGCAGTATCCATCCAGAGCTTTCTGATAGAGATAAGCAACTTCCAAAAGATGCTAGGACAGGAACTTTTTATGCTGGAAGGCCAAACAATGAGATGTTGAAAAGCTTCATCTCGGAGAAAAAAGGACATGCTAGCACAGATGCTACTCCCCAAAAGATGCCACTGCATACTGGATCTATGATAAAAATAGGTGAGAGAAAGGACTCTGGGAGTTATAGAGGAATTGAAGAGATTTGGTTGGAAGTCCTGGAGAAGATTCAAGTTAATGGTTTGAAAGAGTTTTTATATCAAGAAGGGAACCTAAGCTCGCTCAGTTTTGGTGCAGCCCCGACTGTGCAGCTAATGTTTAATACACAACAAGCTAAAGCCACAGCAGAGAAGTTTAGGAGCCTTATCTTACAGTCATTTGAATCTGTTCTTGGGTCTTCAGTGATAGTAGAAATCAGATGTGACCCAAAAAATAGCAAAGGTTCAAGTTTTCAGGCTCCTTTAATCTTGGCAACTAGTAAAGATACCGCATCTCAGATTAGAGATGCAAGCTTGCATGTGGACTCTTATAAAAGGGACACTGGTGAAATTGAAGAAGTAGCTGCATCTCCTGGAGGCCACAAGGTTAAGGCACAAGCTGATGTTCATGCTTTATCCTGCAAAAGAAGTGTGGATGGTGTTGTTATGGAGCAACAAGCCACATCTGAGAAGAAACCAACCATGACCTCCATCCCTGAAGGAAGAACATTGAGGGACCGCACTCAGAGTCAGAGCCTAGTGAGAAGTAAGGTGTCCCTTGCACACGTTATACAGCAGGCAGAAGGATGTACACAGCAGAATAGTTGGTCCAAGCGCAGAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAACTTGAGGATGGAGTCTAGATCAAGGAGCTTACTTTGCTGGAGAGCATCCAGGGCAAGGCGTAGGAAGCTTTCAAGATTGAAAACTAGGACGCGAAAACCACATAAATTGCTGGAGCTCGTGTCATGTGGGAGATGTCTTTCCACCAAGTCTCCAAGGTAG 3561 0.4215 MTRAVRNRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILAERSLLRDLVVLQRSRSLRDPSASPPSWHSPSMMDMLSKRAENDGIVQEERKSIGIERQKDGRRSSGSSPPFVYLGPSKVVPGELSRNKATGNVAGGDRNNRSRLGDSKKVGREDSGRCNRNNILVSCKEPPLSQEGKDSFQEAVSGQSMSTERKSRQRGKQIHNAQTKKLSKQKSHDVPMDSDVVVSSNIHLCDKFPPHGKAVEEPEGGSVRGKCTGLNRAKRRKFRSARRARAAASRDIGAENELSVASNSLPPGPTHCKYQIEEGEEGYSDRNVRNAPRNGCGLPWNWSIIHDRGKTFFDKAGRSFSCGLSDSRSKRASIAANGKNISEMPVASDHFGSSTKSDAEAMPLLIEASGSHESMENVGWAHDYSGELGIYADHLMKDDIDSDLASEVRLGDHHKFRSNGHTRHQNLTQKYMPKTFRDMVGQTLVAQALTNAVIKRKVGLLYVFYGPHGTGKTSCARIFARALNCQSSEHPKPCGFCNSCIAYDLGKNRNIREVGPVSNFDFENIMGLFDNMIVSQLPAQYRVFIFDDCDTLSPNSWSAISKVIDRAPRRLVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIASKEGLDIDKEALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVESLALMSQLATVITDILAGSYDFTKERQKRKFFCKQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFNHSPLPLNNAAGRDATHTSSIHPELSDRDKQLPKDARTGTFYAGRPNNEMLKSFISEKKGHASTDATPQKMPLHTGSMIKIGERKDSGSYRGIEEIWLEVLEKIQVNGLKEFLYQEGNLSSLSFGAAPTVQLMFNTQQAKATAEKFRSLILQSFESVLGSSVIVEIRCDPKNSKGSSFQAPLILATSKDTASQIRDASLHVDSYKRDTGEIEEVAASPGGHKVKAQADVHALSCKRSVDGVVMEQQATSEKKPTMTSIPEGRTLRDRTQSQSLVRSKVSLAHVIQQAEGCTQQNSWSKRRAVSIAEKLEQENLRMESRSRSLLCWRASRARRRKLSRLKTRTRKPHKLLELVSCGRCLSTKSPR* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00011 1186 MobiDBLite consensus disorder prediction 94 224 - -
Pte18g00011 1186 Coils Coil 768 795 - -
Pte18g00011 1186 FunFam DNA polymerase III subunit gamma/tau 633 695 - -
Pte18g00011 1186 Gene3D - 633 695 - -
Pte18g00011 1186 MobiDBLite consensus disorder prediction 815 867 - -
Pte18g00011 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 679 IPR027417 -
Pte18g00011 1186 SMART AAA_5 491 632 IPR003593 GO:0016887
Pte18g00011 1186 MobiDBLite consensus disorder prediction 94 108 - -
Pte18g00011 1186 Pfam DNA polymerase III, delta subunit 475 632 - -
Pte18g00011 1186 NCBIfam DNA polymerase III subunit gamma/tau 458 806 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pte18g00011 1186 SUPERFAMILY post-AAA+ oligomerization domain-like 703 806 IPR008921 GO:0003677|GO:0006260
Pte18g00011 1186 MobiDBLite consensus disorder prediction 146 161 - -
Pte18g00011 1186 Gene3D - 450 629 IPR027417 -
Pte18g00011 1186 CDD HLD_clamp_pol_III_gamma_tau 632 695 IPR045085 -
Pte18g00011 1186 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 461 868 - -
Pte18g00011 1186 MobiDBLite consensus disorder prediction 183 197 - -
Pte18g00011 1186 MobiDBLite consensus disorder prediction 815 838 - -
Pte18g00011 1186 MobiDBLite consensus disorder prediction 842 857 - -
Pte18g00011 1186 Coils Coil 1120 1140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00011 Pte-Chr18 537838 547617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00011 458 764 Core DNA Replication Machinery Family AT1G21690 25.161 1.15e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00011 - - qsa:O6P43_012827 1531.92