Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01939 ATGAAGAGCCGGTCGCATCACCACCGCCTCCAGAGTACTGCGGACGATTGGGTCGATGAGTCTTGGACAGTTGACTGCGTCTGCGGTGTCAATTTCGACGATGGGGAAGAAATGGTCAATTGTGACGAGTGTGGTGTCTGGGTGCACACTCGTTGTTCCCGTTACGTCAAGGGAGACGATGTATTCGTGTGTCACAAATGCAAGACCAAGAACAGTCGGTCCATCTCCTCCACCGCCACCGCCACCTCCAACGAAGCTCAGAAAGAAACCGAAGTAGCTCAGTTTCTGGTTGAGCTTCCCACCAAGACTGTGATGATGGGCACCTCTCTTGCAGCTAATGCAAATGTCACCACCACCGCTAACAACCATAATCCCCCTTGTCGCCGACCTTTTAGGCTTTGGACTGATATACCTATGGAAGAGAGAGTCCACGTTCAAGGGATTCCGGGTGGTGATCCGTCTCTATTCCATGGACTGTCGACTGTCTTCACCCCTCAGCTATGGAAATCCGCTGGCTACATTCCCAAAAGTTTCAGTTTCCAATATAAAGAGTTCCCTTGCTGGGATAACGGTGATCACAAGGGACTTCACTTAAAAGAAGACAATGAGAAACCCCGCGGCAACACAGAGGCAGGTCCTTTCTTCTACACGTGCAAAGAGGCTATTTTAACAGACCCCAGCACTAATTCCTTACAAATTGGAGACGGACAAGTTGGTTTTGACTGCAAGGCATCTTCCAAAGAGATGAACAAGTGCGAGAGTGACTGCACTGTTGGTATGAGGTCCTCCCAGATTTGCATGAAGCAGGAGAGCTGTTGTCTTCATCCTGTTCCCGTGCAATCTACTAAGCGGAGAAAAGAAGACCTTTGGACGTGCAAAGATAGATCTGGCAAGAGGGCTAAAAGTATGGACGAAGATACAAATGGACGGAGAAGTCCACACGCTTCTGAATCAGTGTTTGCACCTACAAGTGATGCAAAACAATTGGAATTTTATGAAGATGGAGGTCTGTTTGTTTTCAAAGCTGACTCTAGGAGCCTAAATAATAGAAGTTCGAGAGAAATTGATGACCATAGTTACATAGCAGATCATTCTAATGCTAGAAAACCCAACATGCCGGCGTTCAATTGTGATGTTATCGCTGTTGGTGAATCTTCAGAAGCCTTGTGTCCTGACAAGATCGGAGTATGTTCTGTTGGAAGGGTAGCAGAACAAGATGAGACCAGTCTGAAGGGTCAATCATTGTCTGAGGTTTCTTCCAAGACTGTCAATGTCGTTATGCCCCTTGCTGGGTGTGGTGTTGAAAATGCTTTGGCCAACGTGGAGACGGAAGATGGCCCTGAAATTGATGTTACAGGAAATAACGCTGTAGCTACTAGTCTTGAGAGTCCTCCTCCTCTCGGTTTGCCTACAGTGCCAGAACTTTATAATCATGTCTTGCAAGCGTGCAATGGTGACAACTCTTCCAGCTCTGTGCAACCTGTTGTTAAGTTGCTGGGGAAAGAAGATGATGGCAATAACAAGAAGCCACTGCTTTTCCAATCTTCTTCTGATATAAATGATGAGAGGATTTTTTCTGATTCTGTGTTATATCCTTCTAAAATTAGTGGTGATACTTTAAGTGTACCGCTGTCTAGTCACAATAAGGCACAACGTGGAGAAATTGGACCAGTAGTACACTGTGGCCTTCGCACTGGTGACGCCGATGGATCATCAGTCGAAGAGTTTCATATCAAACAAGAAACTAAAGATTCCTCAGATAATCGAGAAACCAAATATGTCATAGGGTTTGATGCTGATCAATCAAAATCAGATATTATTGTCTTAGCCTCTCAAGCTCTATTGAAGATGGACTCTAAGGCACCTTTTGATGACTCCAAATGTGAAGATGCTCAAATTCCTGATCCCAATGTAAGGCGAACATCAATATCAGAAAACAAGGTTGCTGTTACTAAAGGTAGTCATCCACCTTCAACTAGCGAGCGAGCAAGAGATGAAGAAAAACACAATTTGCACAAAAAGATGGTAATAGAAAATGAAAAGAATTTGTCGAACTCAACATCCAAAGCATCCTATTCTGGTAGAAGTTCACAAGATTCTTCAAAGCAAGTTGATCCAGAACTGAAGATTTCTGGGCTTAATTCATCTTCTAAAGCATCTTTTTCTCGGAACATCTCAACTAATTCATCATGTGGTGAAGCTAATGAGACCTTTAACCAATCACAGGCTCTATATGGACAGAATAAAATGTCAGCATCAGAGCTAGTGCAAAGAGGGGAAAAGCTTAACCATTCAAACATCCAGCCTTCATCTAAGGCTATCCAAAATCATGCAGGCTCTGTGCTACCTTCTACAGGACCAAGTGCTCCTGCAATGCTAAGTGATGAAGAGCTTGCTTTACTGCTCCATCAAGAATTGAACAGTTCTCTGAGAGTACCACGTGTGCCGCGTGTGAGGCATGCGAGTAGTTTGCCCCAGTTGGCTTCTCCTAGTGGTTCAGGCTTGCTTATAAAACGAACATCTAATTCTGGAGGAAAGGATCACATTGTGGTCTCCAAAAGAAAGCACAAGGATACTTTGAAAGATGAAGTTTGCAAAAGTCATGAGGCTGAGGACGATAGCAAAAAGCTGGAGAAATTGTTGTCTTCGCCGGATCAGAGGAAGCCAGATGTTGCGTGTATAGTAGATTCTTCTGTCAAGGAGGAAGACCATGGATCTTCGACAGCACATTCTGTGTCTAGAAATCTCTCCTTTATCTCCACTTCAACTGCTAACAGTGGGCCTTCCTCCTCTCCTGAGGACCCAAGGTTGTCATTTACGCGTGGGTCACCTAGAATGGATGGCTACTCAGTTGGGAGGGTTGTTCATCTCACTTTACCTGGGTTGATCAATGAGATCATGAGCAAAGGAAGACGCATGACATATGAGGAGCTCTGTAATGCTGTCTTACCACATTGGCACAACTTAAGAAAGCATAATGGAGAGCGTTATGCATACTCAAGCCACTCCCAGGCTGTTCTTGACTGCCTGAGGAACAGACACGAATGGGCACGACTAGTTGACCGTGGTCCAAAGGTAACAAGAAATTCTTTACCATAA 3099 0.4472 MKSRSHHHRLQSTADDWVDESWTVDCVCGVNFDDGEEMVNCDECGVWVHTRCSRYVKGDDVFVCHKCKTKNSRSISSTATATSNEAQKETEVAQFLVELPTKTVMMGTSLAANANVTTTANNHNPPCRRPFRLWTDIPMEERVHVQGIPGGDPSLFHGLSTVFTPQLWKSAGYIPKSFSFQYKEFPCWDNGDHKGLHLKEDNEKPRGNTEAGPFFYTCKEAILTDPSTNSLQIGDGQVGFDCKASSKEMNKCESDCTVGMRSSQICMKQESCCLHPVPVQSTKRRKEDLWTCKDRSGKRAKSMDEDTNGRRSPHASESVFAPTSDAKQLEFYEDGGLFVFKADSRSLNNRSSREIDDHSYIADHSNARKPNMPAFNCDVIAVGESSEALCPDKIGVCSVGRVAEQDETSLKGQSLSEVSSKTVNVVMPLAGCGVENALANVETEDGPEIDVTGNNAVATSLESPPPLGLPTVPELYNHVLQACNGDNSSSSVQPVVKLLGKEDDGNNKKPLLFQSSSDINDERIFSDSVLYPSKISGDTLSVPLSSHNKAQRGEIGPVVHCGLRTGDADGSSVEEFHIKQETKDSSDNRETKYVIGFDADQSKSDIIVLASQALLKMDSKAPFDDSKCEDAQIPDPNVRRTSISENKVAVTKGSHPPSTSERARDEEKHNLHKKMVIENEKNLSNSTSKASYSGRSSQDSSKQVDPELKISGLNSSSKASFSRNISTNSSCGEANETFNQSQALYGQNKMSASELVQRGEKLNHSNIQPSSKAIQNHAGSVLPSTGPSAPAMLSDEELALLLHQELNSSLRVPRVPRVRHASSLPQLASPSGSGLLIKRTSNSGGKDHIVVSKRKHKDTLKDEVCKSHEAEDDSKKLEKLLSSPDQRKPDVACIVDSSVKEEDHGSSTAHSVSRNLSFISTSTANSGPSSSPEDPRLSFTRGSPRMDGYSVGRVVHLTLPGLINEIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKVTRNSLP* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01939 1032 MobiDBLite consensus disorder prediction 848 883 - -
Pte17g01939 1032 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 637 657 - -
Pte17g01939 1032 SMART PHD_3 25 68 IPR001965 -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 622 707 - -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 680 707 - -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 658 679 - -
Pte17g01939 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 75 IPR013083 -
Pte17g01939 1032 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 920 937 - -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 824 840 - -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 294 312 - -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 920 944 - -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 294 322 - -
Pte17g01939 1032 MobiDBLite consensus disorder prediction 823 883 - -
Pte17g01939 1032 PANTHER UNCHARACTERIZED 1 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01939 Pte-Chr17 32567302 32573900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01939 24 67 PHD Transcription Factor Family AT5G22260 44.681 4.58e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01939 - - qsa:O6P43_024103 784.252