Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01913 ATGGCTTCGTCTAATGGCGGTGTGCCTCCCGGATTTCGGTTTCACCCCACTGACGAAGAGCTGCTCCATTACTACTTAAAAAAGAAAATATCTTTTCAGAAGTTTGACATGGAAGTCATCAGAGAGGTGGACCTGAATAAGATGGAGCCGTGGGAGTTGCAAGAGAAATGTAAGATTGGGTCCATGCCACAAAATGAGTGGTACTTCTTCAGTCACAAGGATAGGAAGTATCCGACTGGGTCAAGGACCAACAGAGCAACCAGTGCTGGATTCTGGAAGGCTACAGGAAGAGACAAATGCATCCGTAGCACCTTCAAAAGGATAGGGATGAGGAAAACCCTTGTGTTTTACAGAGGCAGAGCTCCTCATGGCCAGAAGACAGACTGGATTATGCACGAGTACCGCCTTGAAGATGGTGATGATGATCCCCAAGCAAACTCCAATGAAGATGGTTGGGTAGTATGCAAGGTGTTCAAGAAGAAAAACCTTTTCAAGATTGGAAACGAAGGTGGCTCCAACATGAATAACTCTGCAGACCAACAACACACCAACACATCCAGCACAGACCAGCATCGCACTTTTATGCACAGATCAGAAAATCAATACTTGATGATACGCCATCAGCATCAGCATCAACATCAACAAAACCAAGGAAATCCATCTGCCCATGCCTTTGAACTTGACAAGCCTGCTGCTGCTGGGTTAGCTCTTCACTACCCACACTCGCAACCGCATCACCATCACTACTCTCTCTTCCAACCTCACCAACCTAATATTCTGTCAACAGCCAACAAGTCAATTGTTAGTTACGACTATTCAGCAACAACTCTTCCCAGCAGCTCCGATCAGTCGCCTCTCATGGTCAAGCAACTAATGTCAAATGCTAGGGATTGCGAGAGTGCCGTTAGTGAAAGTCTACGTTACCAAGTTTATGAGCCTGGTGATCTGGAGGTTGGCACATGTGACCAGCAACCCCAACCCATAGGTGCTGCTGCAGCAAGAGATGATCAATCTGAGATGAACGAGTGGGGCATGCTTGACAGGCTTGTCACTTCTCACGAGTATGACAATGCATCGTCCGCCAATCCCATTCGTCACCTTACATTACGTGGTGAGATGAACTTGTGGGGTTACGGCAAGTCGGCAAGCAATAAGCAAGAATGA 1164 0.4699 MASSNGGVPPGFRFHPTDEELLHYYLKKKISFQKFDMEVIREVDLNKMEPWELQEKCKIGSMPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRSTFKRIGMRKTLVFYRGRAPHGQKTDWIMHEYRLEDGDDDPQANSNEDGWVVCKVFKKKNLFKIGNEGGSNMNNSADQQHTNTSSTDQHRTFMHRSENQYLMIRHQHQHQHQQNQGNPSAHAFELDKPAAAGLALHYPHSQPHHHHYSLFQPHQPNILSTANKSIVSYDYSATTLPSSSDQSPLMVKQLMSNARDCESAVSESLRYQVYEPGDLEVGTCDQQPQPIGAAAARDDQSEMNEWGMLDRLVTSHEYDNASSANPIRHLTLRGEMNLWGYGKSASNKQE* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01913 387 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Pte17g01913 387 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Pte17g01913 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 240 - -
Pte17g01913 387 FunFam NAC domain-containing protein 17 164 - -
Pte17g01913 387 MobiDBLite consensus disorder prediction 169 190 - -
Pte17g01913 387 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Pte17g01913 387 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01913 Pte-Chr17 32331649 32333601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01913 1 377 NAC Transcription Factor Family AT1G33280 49.872 8.57e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte17g01913 NAM 6.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01913 - - qsu:111997697 481.485