Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01908 ATGAACACCGCAGTAGAGAGAAAAGTTCATTACTCACTTCCTGAAGGATCCGATATTGGAACATCATTGTCAAATCTCATATTAACCGCAGGGACAAACACCTTGGATGCAATTTTTTCTCGTTGCCCACCAACAGGCAGGAGGACAGCTACGGTAGCAAACCCCATTTTTGACCTTACGGGCTATTCTGTCTACCTTCGCCAGAGAGATCTCCTGCACAAGTTCTGCCAAGATAGCCGAGAAAGCGGTTCCTATCCTAGCAGTTCTCTCGCACACCAGCTCGAGGACTACGTCTGCACAAGCACGAGGGCCAGGGCGAGCACCAGCGGGAGCTCGTACCTGGGGCCCTCCAAGAAAAAACTGTACAGGGGAGTGAGACAGAGACATTGGGGGAAGTGGGTAGCCGAGATCAGACTTCCTCAGAACAGACTGAGAATCTGGTTAGGCACTTACGAGACTGCTGAAGCTGCCGCTTATGCTTATGATCGTGCCGCTTACAAGCTTCGAGGAGAGTATGCGCGTTTCAACTTTCCAAATCTAAAGGACCCCAGCAAGCTTGGATTTGGAGATTCCACGAGATGGAATGCTTTGAAGAGTTCTGTGGACGCTAAAATCCAAGCTGTATGCCAGAAGGTGAAAAGGGAAAAGGCTAAAAAGAATGCCACCAAGAAGTTCCATTCTGATGCTGCAGCTGCAGGTGCTGAAATTCACTCTTCTTCATCCTTCTCGCCTCTGTCTCCAGTCGTTTTGGAAGAGGATTGGACCAGCGACTTGATATCACCTACTATTTCAGAGGATGACACTTGGAAAGCGCGGCATTTTCCGACTGGAAGTGCGCTGATGCTAAATGAGGAAGCAGAATTCGAAGGGTGTTCGCTGGCAAAGATGCCATCCTTCGATCCCGAGCTGATATGGGAAGTTCTAGCCAATTAA 933 0.492 MNTAVERKVHYSLPEGSDIGTSLSNLILTAGTNTLDAIFSRCPPTGRRTATVANPIFDLTGYSVYLRQRDLLHKFCQDSRESGSYPSSSLAHQLEDYVCTSTRARASTSGSSYLGPSKKKLYRGVRQRHWGKWVAEIRLPQNRLRIWLGTYETAEAAAYAYDRAAYKLRGEYARFNFPNLKDPSKLGFGDSTRWNALKSSVDAKIQAVCQKVKREKAKKNATKKFHSDAAAAGAEIHSSSSFSPLSPVVLEEDWTSDLISPTISEDDTWKARHFPTGSALMLNEEAEFEGCSLAKMPSFDPELIWEVLAN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01908 310 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Pte17g01908 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 56 308 - -
Pte17g01908 310 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Pte17g01908 310 Gene3D AP2/ERF domain 121 179 IPR036955 GO:0003700|GO:0006355
Pte17g01908 310 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Pte17g01908 310 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Pte17g01908 310 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Pte17g01908 310 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Pte17g01908 310 CDD AP2 120 180 IPR001471 GO:0003700|GO:0006355
Pte17g01908 310 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01908 Pte-Chr17 32287349 32289169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01908 14 311 AP2-EREBP Transcription Factor Family AT1G64380 46.707 9.03e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte17g01908 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01908 - - qsa:O6P43_024033 344.354