Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01884 ATGGGCCATCATTCCTGCTGCAACCAACAAAAGGTTAAGAGGGGTCTTTGGTCCCCTGAGGAAGATGAGAAGCTCATCAGATACATTACCACACATGGTTACGGCTGTTGGAGTGAAGTCCCAGAGAAAGCCGGGCTTCAAAGGTGTGGGAAGAGTTGTCGCCTCAGATGGATTAATTATTTGAGGCCAGATATTAGAAGAGGCAGGTTTACTCAAGAAGAGGAGAAATTAATAATAAGTCTTCACGGTGTGGTGGGCAACAGGTGGGCACATATAGCAAGTCATTTGCCAGGAAGAACGGACAATGAGATAAAGAACTACTGGAACTCTTGGATCAAAAAGAAGATAAAAAAACCCACAGCACCTGCGGCCACCAATGCACAAAGTGCTGAACATTCGCACTTAAATTATACTTGTAACCAACTAGAACTTGTAAATCAAGATATATCCTCAAAGTCAGCGGTTCAAGAACCGTTGTTATTTTCATCTTCTCGCCCCCTTTTTATGTTTGAGATGTCTTCACTTGAAGGGATAACAGCAGACCATAGTACTTTACCAGCAGACTTATATCAAGATTCTGTAGGTTTGAACTCTGAAACCTGGAACTTGAACCAGGATCATGTACAAGCTGTCCTCCCTCTGCCTCCAGCTAGCAATTTCACGACTGTTACAAGTTATTTGCCACCCTTGATAGAGAACGTGGAATCCATAGCGCCCATGGACGAACATGAAGGGATTGCGCAACTGGAGTACTCGCAAAGGCAGCAGGAGTACTTCAGTGAATGGGTTGAAGCTCAACGACAACGCCCAAATTTTCTCTTTTGGGATAGTGTTGAGGGACAAATTGGAGGGGAGGAGATTGCATCGAGTTCGGCCAACTTGGGATCGAACAGTCTTTCTCCATAA 906 0.4459 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTQEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIKKPTAPAATNAQSAEHSHLNYTCNQLELVNQDISSKSAVQEPLLFSSSRPLFMFEMSSLEGITADHSTLPADLYQDSVGLNSETWNLNQDHVQAVLPLPPASNFTTVTSYLPPLIENVESIAPMDEHEGIAQLEYSQRQQEYFSEWVEAQRQRPNFLFWDSVEGQIGGEEIASSSANLGSNSLSP* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01884 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte17g01884 301 CDD SANT 69 112 IPR001005 -
Pte17g01884 301 SMART sant 66 114 IPR001005 -
Pte17g01884 301 SMART sant 13 63 IPR001005 -
Pte17g01884 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte17g01884 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte17g01884 301 CDD SANT 17 61 IPR001005 -
Pte17g01884 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte17g01884 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte17g01884 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte17g01884 301 Gene3D - 69 139 - -
Pte17g01884 301 PANTHER MYB DOMAIN PROTEIN 55 1 228 - -
Pte17g01884 301 Gene3D - 6 66 - -
Pte17g01884 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte17g01884 301 FunFam MYB transcription factor 6 66 - -
Pte17g01884 301 FunFam Transcription factor MYB26 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01884 Pte-Chr17 32112833 32114410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01884 1 295 MYB Transcription Factor Family AT1G63910 48.199 5.91e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g01884 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01884 K09422 K02947 tcc:18606585 397.897