Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01880 ATGTCTTCCGATCTCTCTGTATTTGATGGTTCATTCCTCAAGCATTTGGCCTTCGGCATGTTCTCCTCCGATGGAGGAGCTGACCCTCTGTGTTTCTCTGACCTTGATCCTGAACCCTTCACTCTACTATCCGACTCAACAGCTGTTCATGAAACTTCTGACACGCGAACCCAGCAATACGCACTCGACGAGTCTTCTAATTCTTTCCTTTCTTCTTCTCCTCCAAGTAACCAGATGGAGAACATGAGCCTGAGTCATGCGGAACCTCTGTCAAATGGTCTAGTTTTGGATAATGGATTAGATAAATTCTCTATCTTGGAAGGCGTGGAAGTCAAGAACAGGGAATGCAAAATGGGATTTGACAACTCATGTAATCAGCCTTTCTTTCCTCATAGTTACAGTGGTTTCGAAAATGTGACAAAATATATGGGGAGGAGCATTAGCTGTTGTGACTCTTTAGATGACAAGCCTCGTTTGTCATTTCAACCTAACTTTACCAGCACTGTCATGGATTCTTGTGGTTCAAACAACCAAGCTTTGAGCTCCCCTGACCAGAGTTCTAGCGCCGGACAAATGAGGAGGGCTTGCAGCACTGGTGACTTGCAGGTGAAATCAAATTTTGCTTACCATTATACCATTACTTGTTGCTCTGTTTCTCAATTCAACGTCTACGTGCATCAGTTTAAGTTTTGCTCTACTTTTATACAGAGTGCGAAAGTGTTTCAAGTGAACCAAAGGTCTCCCACAAGCTCTTTGGCTACAGAGGGCTCCTTATCCTTACGCGAGGATGCAAATCTCAAAGTGGGGCGTTACACTGCAGAAGAAAGAAAAGAGAGGATCTCCAAGTACAGAGCTAAGAGAACGCAGAGAAATTTCAACAAGACTATTAAGTATGCGTGTCGGAAAACACTAGCGGACACTCGACCCCGTATACGTGGCAGATTCGCGCGCAACGACGAAAACGTCGAGACTCCGAAAGTTTCATGTGTCACTGGCGAATACGAAGAAGAGCTTTGGTTGGACGGATTGCATGAAGAACAAGACGTTCAAAGAGCAGAAGGGCAACAGTATAAGAACCATTTTGGGATGACCCAGTTCCATTACTACGGCGAGTTACAGATACAAATGCCTCATGACATGTTTTATGCTTGA 1152 0.4453 MSSDLSVFDGSFLKHLAFGMFSSDGGADPLCFSDLDPEPFTLLSDSTAVHETSDTRTQQYALDESSNSFLSSSPPSNQMENMSLSHAEPLSNGLVLDNGLDKFSILEGVEVKNRECKMGFDNSCNQPFFPHSYSGFENVTKYMGRSISCCDSLDDKPRLSFQPNFTSTVMDSCGSNNQALSSPDQSSSAGQMRRACSTGDLQVKSNFAYHYTITCCSVSQFNVYVHQFKFCSTFIQSAKVFQVNQRSPTSSLATEGSLSLREDANLKVGRYTAEERKERISKYRAKRTQRNFNKTIKYACRKTLADTRPRIRGRFARNDENVETPKVSCVTGEYEEELWLDGLHEEQDVQRAEGQQYKNHFGMTQFHYYGELQIQMPHDMFYA* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01880 383 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Pte17g01880 383 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 44 353 IPR045281 GO:0009909
Pte17g01880 383 Pfam CCT motif 276 318 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01880 Pte-Chr17 32088672 32090601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01880 272 327 C2C2-CO-like Transcription Factor Family AT5G24930 50.000 4.69e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte17g01880 CCT 5.2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01880 - - qsa:O6P43_024154 294.664