Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01878 ATGAAATGTCATCCTCTCCTTATTTGGATTTTTTTGTCAACTGCATCTTTTCAGCAGTATCCAAGAGTAGCAGGGGGGCATGTCGAGATTTCATCTCACCATGGTGCTGCCTCTAATCTCTCAGGGGGCCTTCTCGTAGATACAAATCTAGATACTTCAATTCCTGATACCTATAGACCACCGCCAGCTCCTATTCCCTATAATGTGACTGTAGTGGTTCCTCAAACTCCACCTTTTGCTCAAGAAATGCATAGTAACAAGGTTGATGTGTTTCAGAATTCGTCAAATTCTAGTCCAGTTGAAGCTGCTCCTTCAGGTAACAACAATGGGACATCTCTGAAGTCTGAAGACCCAAAGGAATTGGAGCACAAGGTTTGTTATGATTCAAATCTTGGTTCCGCTAAAGATTCAGATGCTGAGCTCTCAGTGTCAGCTGTGGAAGAGGAAGATGCATGCCCCATCTGTTTGGAAGAGTATGATGCAGAGAATCCAAAGCTCACCACAAACTGCGAGCATCATTTTCACCTTGCGTGTATTCTTGATTGGATGGAAAGAAGTGAAACATGTCCTGTATGTGATAAGGTCTGCTTTGGACTTCTTATTTTTATTTTCCCAATTTTCAGTTGCCCTAACCGTGTAACATTCAAGCATCACGGACTGAGAGAATGCTATTTTCACTATGATGCAGAATATGATTTTTGA 702 0.4188 MKCHPLLIWIFLSTASFQQYPRVAGGHVEISSHHGAASNLSGGLLVDTNLDTSIPDTYRPPPAPIPYNVTVVVPQTPPFAQEMHSNKVDVFQNSSNSSPVEAAPSGNNNGTSLKSEDPKELEHKVCYDSNLGSAKDSDAELSVSAVEEEDACPICLEEYDAENPKLTTNCEHHFHLACILDWMERSETCPVCDKVCFGLLIFIFPIFSCPNRVTFKHHGLRECYFHYDAEYDF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01878 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 196 IPR013083 -
Pte17g01878 233 Pfam Ring finger domain 151 192 IPR001841 -
Pte17g01878 233 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Pte17g01878 233 SUPERFAMILY RING/U-box 147 197 - -
Pte17g01878 233 FunFam Putative E3 ubiquitin-protein ligase RHB1A 129 197 - -
Pte17g01878 233 MobiDBLite consensus disorder prediction 91 120 - -
Pte17g01878 233 CDD RING-H2_AIRP1-like 148 195 - -
Pte17g01878 233 MobiDBLite consensus disorder prediction 91 114 - -
Pte17g01878 233 SMART ring_2 152 192 IPR001841 -
Pte17g01878 233 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01878 Pte-Chr17 32073149 32076043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01878 16 194 C3H Transcription Factor Family AT5G41350 45.455 5.07e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01878 - - gmx:100816369 232.646