Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01877 ATGGCAGGATGGTTGACTTTAACCAATGGGTCCGAATTCAATTCCCATGAGAACATAGGAGTTTGTCGGGGTAGTGGGTGTGGTACTAAACTGGACCATGCGGTACAAGGCGGTCACGATGATCTCAATGACTTGAAAATCAAATTGAGATCCTTGTTTTACCAATTTATCTTGATTTACGTCAAAGACCTTTCCTCTGGAGGTGTAATTCGTCCTTTGCCTGTAATGCTTGGTGATGGGCAGCCATTGGATTTGTATGATTTGTTCTGGGTTGTCGCGGATAGAGGTGGGTATGATGTGGTTTCAAAGAAACGTCTCTGGCCTTCTGTGCTGCAGCAATTGGGTAAGGGTATTGATATTCTGGCTTCGGTAAAATTAGTTTATTATAAGTATCTGAATGGATTTGAAGGTTGGTTCTGGAAAACGTTTGGTGCTAAGCACCTGAAAACTGGATTTCATGGATGTTACGAAAAACTTGAGAAGTCATTGCCTTTAGAGTTCGATAAAACGCTTACCGGATTATTGTCTGTTCGGCCTAATAAAAAAAGGAAAGAAAACAAATTTGCTCGGTTGGCATCAAACAAAATTGGGAATTTGTTTGATGCGGTTACACAGAGGAATCAATCCAATTTATCAGAACCCTACAAGGAATCTGTAATATTAGAGAAAAATGGTAGACACAACCAGACCAATCCATATAGGACCTCGGACTTTAACAAACAATTGGATTCTCGTAAGAGGAAGAGGGTCTCTTTGTCAGGAACGCTGGATTGGATTAGACGGGTAGCCAAGTGTCCTCGCCATCCTTCAATAGGACCACTACCTGAGGTACCTAAATGGAGGAAATACAAAGGAAAGGAGCTTTGGGCCCAGGCTTTAAGGGCTAGGGAGGCACTGTTGCTGAAAAGACAATTTGAGTCAAACCACGAAGCATCTTACTTACTGAGGCAAAAGATGCATCCAGACATGTATGAGGATGATATTCTGACACACCAGACTATGACGAAAGCAAAATGCAGACAGAGGCTTCCAACAGTAACCATATTTCCTTTATGCTCTTGTTGCAATTCGTTTCCAGCTTCTAACAGTGAGGTAGCAGCAGGCTCAATTAAGACAGAGGCAGATTCATTTAACGAAGTGGCCATGACAGAGACATCTGAGGATGATATTTCATACAAACAAGTGTCTGTAGGACCTCTATTTCAAGCTGAAGTTCCCAACTGGACTGGTGTAGTTCATGAAACTGACTCTAAGTGGCTTGGAACGCAGCTGTGGCCTTTGAAGGATGTGGAACTAAAATCTGCAATCGAGACAAATTCCATTGGGAGAGAAAGTCAAAAGAGATGTGGGTGTCCAGTTCAATGCCCTGCTGAATGTATTAGATTTCACATTGCTGAGGAAAGGACAAAATTGAAGCTTGAACTGGGTTCAACCTTCTTCCATTGGGGATTTCACCGTATGGGTGAAGAAGTTTCTCTTCAGTGGACTCCTGAAGAAGAAAAAAGATTCAAGGATATTTTCCAGTCCAACCATTATAAACACTTTTGGAACAGCACATGCAAATACTTTCCGGGAAAAACTAGGAGAGACTTGATAAGCTATTACTTCAATGTATATGTTATAAGAAGAAGATACTATCAGAATCGAGTGACTCCCAAGATGGTGGACAGTGATGACGACGAATCGGGCTTAGGATCTACCGGTGATGACTTTGGGCGAGAAGCAGTTAAGGATCTAGCTAACAGACTTGTTGAATGTCCCATTAACGAGCGATGCACTGTTCTTTAA 1788 0.42 MAGWLTLTNGSEFNSHENIGVCRGSGCGTKLDHAVQGGHDDLNDLKIKLRSLFYQFILIYVKDLSSGGVIRPLPVMLGDGQPLDLYDLFWVVADRGGYDVVSKKRLWPSVLQQLGKGIDILASVKLVYYKYLNGFEGWFWKTFGAKHLKTGFHGCYEKLEKSLPLEFDKTLTGLLSVRPNKKRKENKFARLASNKIGNLFDAVTQRNQSNLSEPYKESVILEKNGRHNQTNPYRTSDFNKQLDSRKRKRVSLSGTLDWIRRVAKCPRHPSIGPLPEVPKWRKYKGKELWAQALRAREALLLKRQFESNHEASYLLRQKMHPDMYEDDILTHQTMTKAKCRQRLPTVTIFPLCSCCNSFPASNSEVAAGSIKTEADSFNEVAMTETSEDDISYKQVSVGPLFQAEVPNWTGVVHETDSKWLGTQLWPLKDVELKSAIETNSIGRESQKRCGCPVQCPAECIRFHIAEERTKLKLELGSTFFHWGFHRMGEEVSLQWTPEEEKRFKDIFQSNHYKHFWNSTCKYFPGKTRRDLISYYFNVYVIRRRYYQNRVTPKMVDSDDDESGLGSTGDDFGREAVKDLANRLVECPINERCTVL* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01877 595 SMART ARID_2 44 136 - -
Pte17g01877 595 Pfam Myb-like DNA-binding domain 494 537 IPR001005 -
Pte17g01877 595 SUPERFAMILY ARID-like 52 140 IPR036431 GO:0003677
Pte17g01877 595 CDD ARID 50 136 - -
Pte17g01877 595 Pfam ARID/BRIGHT DNA binding domain 68 136 IPR001606 GO:0003677
Pte17g01877 595 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 38 589 - -
Pte17g01877 595 SMART bright_3 48 141 IPR001606 GO:0003677
Pte17g01877 595 Gene3D - 42 147 IPR036431 GO:0003677
Pte17g01877 595 ProSiteProfiles ARID domain profile. 47 140 IPR001606 GO:0003677
Pte17g01877 595 CDD SANT 495 538 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01877 Pte-Chr17 32066200 32069011 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte17g01877 ARID 4.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01877 - - qsa:O6P43_034260 528.48