Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01861 ATGGCTAAGGATTTTTTGTATTTGGGTTGTATAGGAAATCCGTGCCGTGGAAACCTATCACCACAGCCACACTATCCATCGATGACAAGATACCCGAGAGGCATGTCACCGCCGGAAGCAAAGAAGATGGAGGGGACAGAGGCAAAGGCCGTTTTCTTGGTACATGGAATGACATGTGCTGCTTGCGCTGGATCCGTAGAGAAGGCTATCAAGAGGCTTCCTGGAATAAGAGAAGCCACGGTCGACGTGCTGAATGACAAAGCTCAAGTTCTGTACTACTCCAGCTTCGTCAGTGAGGAGAAAATACGCGAAACGATTGAGGATGCTGGATTTGAAGCCAAGTGTATTGAGGATGAGTCTGATGAGACTTCGAATCAAGTATGCCGAATACGCATAAATGGAATGACATGTACTTCATGTGCTTCGACAGTAGAGTCAGCTCTCGAAGCATTTTCTGGCGTGCAAAAAGCTCAAGTGGCTTTAGTAAAAGAAGAAGCGGAAGTTTATTATGATCCGAAGGTTGTGAGCTATAACCAAATATTGCAGGTTATAGAAAATACTGGGTTTGGAGCAGTGCTGATAAGCACAGGGGATCATATAAGCAAAATAGAACTTAAGGTCGAAGGTATAAAAAATGACCAATCTATAAGAGCTATTCAAAAGGCACTCCAAGCACTTGGAGGTGTTCGAAATGTTGACGTGTATCCTGACTGCAACAAAATCTCAATTTCATATAAACCATACTTGACAGGACCTAGAACTTTTATTGAGACCATTGATTCTAAATGCTCAGGATCTTTCAGGGCAATGGTGTACCCAGAGGGAGAAGGAAAAGAAACACATCGAGAGCAAGAAATCAAGAAATACTTGAAATTCTTCACGTGGAGTCTGGTCTTTGCTTTTCCAGTTTTCTTGATATCCATGGTCTTCATGTATGTCCCTGGAATGAATCGTATTCTAGATATCAAAGTAGTCAATATGCTAACCATTGGAATGTTACTGAAGTGGGAGCTATCAACTCCTGTACAGTTCATCATAGGCCGGCGATTCTACGTTGGATCGTACAAAGCTTTGCGCCATGGTGCTCTTAACATGGATGTATTGATTGCATTGGGAACAAATGCAGCCTACTTCTACTCTCTCTATGTGGTGGTAAGAGCTGCTTTGTCAAAACATTTCGAGGGCACTGATTTCTTTGAGACCAGCGCAATGCTGATTTGTTTCATTCTTCTTGGGAAGTATCTTGAAGTTTTGGCTAAAGGGAGGACGTCCCAAGCAATTGCCAAGCTCATGAACCTGGCTCCCGAGACAGCAGTGTTGTTAAGTCTTGATAATGAGGGAAATATAGTGAGTGAACAGGAAATCGATGGTCGGTTGATACAAAAAGATGATGTGATAAAAGTTGTTCCTGGTGCAAAAGTTGCAGCAGATGGATTTGTCACTTGGGGACAAAGCCATGTAAATGAGAGCATGATCACTGGAGAGGCAAAACCTGTGGCGAAGAGAAAGGGTGATATGGTGATAGGGGGGACTATTAATGAGAATGGAGTTTTGCATGTAAAGGTTATACGGGTTGGATCAGAGAGTGCTCTTTCGCAGATTGTTCGACTTGTTGAGGCTGCGCAGATGGCTAAGGCTCCAGTACAGAAGTTAGCCGACCGTATATCTAAGTACTTCGTGCCTGTGGTTATTGCAATTTCGGTTTTGGCTTGGCTTACATGGTTTTTGGCTGGAAAATTCCATGCTTACCCAAAATCTTGGATACCATCCTCCATGAATAGTTTTGAGCTCGCACTTCAGTTCGGGATATCCGTCATGGTCATAGCCTGCCCTTGTGCTCTGGGCCTGGCAACTCCCACTGCTGTGATGGTTGGGACAGGAGTTGGCGCATCTCGAGGCATATTGATCAAAGGAGGGCAAGCACTAGAAAATGCTCGCAAGGTCAACTGTATCGTGTTCGATAAGACTGGGACTCTCACAGTTGGGAAGCCAGTGATCGTCAGCACGAAACTGTTGAGCAACATGGCAATTCCAGATTTCTACGAGCTTGTTGCTGCATGTGAGGTTAATAGCGAACATCCACTGGCCAAGGCCATTGTTGAGCACGCCAAAATGTTCAGAAAAAATGATCAGAACCCTTCCTGGCCAGAAGCTCGGGATTTTCTATCCATGACAGGGCAGGGAGTAAAAGCTATTGTTCGGAACAAAGAAATAGTCATTGGTAACAAGAGCATGATGCTGAACCACGAAATAGCAGTTTCAGTCGAGACAGAAGAAATACTTGCACAAGTTGAAGCAATGTCTCAAACAGGGATTCTCATATCTATTGATAAAGAAATAGTCGGAATTTTGGCTATATCTGACCCACTAAAACCGGGTTCTCGAGAAGTTATTTCTATTCTCAAGTCTATGAATGTCAAGAGCATCATGGTGACTGGTGACAACTGGGGAACCGCCAATGCTATTGCCAATGAAGTAGGCATCGACACTGTCATCGCAGAAGCCAAACCTGAAGATAAAGCCGAGAAAGTGAAAATTTTGCAGGCTTCTGGACACACTGTGGCAATGGTGGGAGATGGCATAAATGACTCACCAGCGCTGGTAGCAGCAGATGTTGGAATGGCAATTGGTGCCGGCACAGATATTGCGATTGAGGCAGCTGACATTGTTTTGATGAAAAGCAACCTGGAGGATGTCATTACTGCTATCCACCTTTCCAGGAAGACTTTATCTCGTATACATGTGAATTATGCATGGGCCTTGGGTTATAACATTCTAAGCATCCCTATTGCTGCGGGGGCACTTTACCCATCCATTAGATTTCGTCTCCCACCATGGATTGCTGGAGCTGCTATGGCAGCCTCATCTGTCAGCGTCGTCTGCTCATCCCTCTTGCTAAAGAACTACAAGAGACCCAAGCAGCTAAACAATCTGGCGATGAGCCAAGTCAGAACTGAATGA 2961 0.4458 MAKDFLYLGCIGNPCRGNLSPQPHYPSMTRYPRGMSPPEAKKMEGTEAKAVFLVHGMTCAACAGSVEKAIKRLPGIREATVDVLNDKAQVLYYSSFVSEEKIRETIEDAGFEAKCIEDESDETSNQVCRIRINGMTCTSCASTVESALEAFSGVQKAQVALVKEEAEVYYDPKVVSYNQILQVIENTGFGAVLISTGDHISKIELKVEGIKNDQSIRAIQKALQALGGVRNVDVYPDCNKISISYKPYLTGPRTFIETIDSKCSGSFRAMVYPEGEGKETHREQEIKKYLKFFTWSLVFAFPVFLISMVFMYVPGMNRILDIKVVNMLTIGMLLKWELSTPVQFIIGRRFYVGSYKALRHGALNMDVLIALGTNAAYFYSLYVVVRAALSKHFEGTDFFETSAMLICFILLGKYLEVLAKGRTSQAIAKLMNLAPETAVLLSLDNEGNIVSEQEIDGRLIQKDDVIKVVPGAKVAADGFVTWGQSHVNESMITGEAKPVAKRKGDMVIGGTINENGVLHVKVIRVGSESALSQIVRLVEAAQMAKAPVQKLADRISKYFVPVVIAISVLAWLTWFLAGKFHAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASRGILIKGGQALENARKVNCIVFDKTGTLTVGKPVIVSTKLLSNMAIPDFYELVAACEVNSEHPLAKAIVEHAKMFRKNDQNPSWPEARDFLSMTGQGVKAIVRNKEIVIGNKSMMLNHEIAVSVETEEILAQVEAMSQTGILISIDKEIVGILAISDPLKPGSREVISILKSMNVKSIMVTGDNWGTANAIANEVGIDTVIAEAKPEDKAEKVKILQASGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIHLSRKTLSRIHVNYAWALGYNILSIPIAAGALYPSIRFRLPPWIAGAAMAASSVSVVCSSLLLKNYKRPKQLNNLAMSQVRTE* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01861 986 SFLD C1.7: P-type atpase like 634 909 - -
Pte17g01861 986 Pfam Heavy-metal-associated domain 130 189 IPR006121 GO:0046872
Pte17g01861 986 Pfam Heavy-metal-associated domain 51 112 IPR006121 GO:0046872
Pte17g01861 986 CDD HMA 130 191 IPR006121 GO:0046872
Pte17g01861 986 Gene3D - 44 115 - -
Pte17g01861 986 Gene3D - 125 197 - -
Pte17g01861 986 ProSitePatterns Heavy-metal-associated domain. 132 162 IPR017969 GO:0046872
Pte17g01861 986 Gene3D - 619 914 IPR023214 -
Pte17g01861 986 NCBIfam HAD-IC family P-type ATPase 405 936 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pte17g01861 986 NCBIfam heavy metal translocating P-type ATPase 365 966 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pte17g01861 986 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Pte17g01861 986 Pfam E1-E2 ATPase 434 630 - -
Pte17g01861 986 SUPERFAMILY HMA, heavy metal-associated domain 125 198 IPR036163 GO:0046872
Pte17g01861 986 Gene3D - 738 788 IPR023299 GO:0000166
Pte17g01861 986 Gene3D - 659 737 IPR023299 GO:0000166
Pte17g01861 986 ProSitePatterns Heavy-metal-associated domain. 54 83 IPR017969 GO:0046872
Pte17g01861 986 FunFam Copper-transporting ATPase HMA5 125 196 - -
Pte17g01861 986 ProSitePatterns E1-E2 ATPases phosphorylation site. 654 660 IPR018303 -
Pte17g01861 986 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 984 - -
Pte17g01861 986 SUPERFAMILY Calcium ATPase, transmembrane domain M 396 645 IPR023298 -
Pte17g01861 986 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Pte17g01861 986 NCBIfam copper ion binding protein 51 113 IPR006122 GO:0005507
Pte17g01861 986 NCBIfam copper ion binding protein 130 190 IPR006122 GO:0005507
Pte17g01861 986 SUPERFAMILY HMA, heavy metal-associated domain 197 261 IPR036163 GO:0046872
Pte17g01861 986 SUPERFAMILY HAD-like 651 963 IPR036412 -
Pte17g01861 986 CDD P-type_ATPase_Cu-like 293 953 - -
Pte17g01861 986 SFLD p-type atpase 634 909 IPR044492 -
Pte17g01861 986 SUPERFAMILY Calcium ATPase, transduction domain A 452 538 IPR008250 -
Pte17g01861 986 Gene3D - 200 271 - -
Pte17g01861 986 PRINTS Copper-transporting ATPase 1 signature 49 74 - -
Pte17g01861 986 PRINTS Copper-transporting ATPase 1 signature 75 98 - -
Pte17g01861 986 PRINTS Copper-transporting ATPase 1 signature 104 124 - -
Pte17g01861 986 PRINTS Copper-transporting ATPase 1 signature 150 171 - -
Pte17g01861 986 Gene3D - 420 542 - -
Pte17g01861 986 PRINTS P-type cation-transporting ATPase superfamily signature 880 892 - -
Pte17g01861 986 PRINTS P-type cation-transporting ATPase superfamily signature 804 814 - -
Pte17g01861 986 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Pte17g01861 986 PRINTS P-type cation-transporting ATPase superfamily signature 782 793 - -
Pte17g01861 986 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Pte17g01861 986 PRINTS P-type cation-transporting ATPase superfamily signature 652 666 - -
Pte17g01861 986 Pfam haloacid dehalogenase-like hydrolase 648 871 - -
Pte17g01861 986 SUPERFAMILY HMA, heavy metal-associated domain 46 119 IPR036163 GO:0046872
Pte17g01861 986 FunFam Copper-transporting ATPase 1, putative 420 542 - -
Pte17g01861 986 ProSiteProfiles Heavy-metal-associated domain profile. 201 267 IPR006121 GO:0046872
Pte17g01861 986 FunFam Copper-transporting ATPase HMA5 47 118 - -
Pte17g01861 986 CDD HMA 51 114 IPR006121 GO:0046872
Pte17g01861 986 FunFam Probable copper-transporting ATPase HMA5 773 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01861 Pte-Chr17 31973575 31978736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01861 48 986 Primary Pumps ATPases AT1G63440 71.686 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01861 K17686 - qsa:O6P43_024194 1491.09