Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01860 ATGGCTAGCAAAATGTTAGCTTTGAGTTGCATTAGAAATGAGAGCTTGGGAGATCTTTCGCCTCGCCCTCACTACCCTTCCATGCCCCGATACCCAAAGGGTGTTTGCGGTGAAGGTAGTAGTGGAGTGGCCCTGGATTTGGAGGGATCAGAGTCGAAGACTGTATTGTCGGTTATGGGGATGACTTGCTCAGCATGTGCTGGTTCTGTCGAGAAGGCCATCAAGCGTCTACCGGGTATTCGCGAGGCCGTCGTCGACGTGCTCAACAACCGAGCTCAGGTTCTGTATTACCCCGCCTACGTTAACGAGGAGACCATTCGTGAGACTATTGAGGATGTTGGATTTGAAGCCACGCTCATTGCGGATGAATCGAATGAAAGATCAGTTAAAGTATGCCGCATACATATTCATGGAATGACTTGCACGTCTTGCTCCTCCACTATTGAGTCCGCTCTGCAGGCAACCCACGGTGTACATAAAGCACAGGTAGCCTTGGCAACCGAGGAAGCGCAAATCCAATATGATCCTAACGTTGTCAGCTGCGATCAGCTTTTGGAAGCCGTACAAGATACTGGCTTTGAGGGCACACTAATAAGCTCGGGTGAAGACATGAGCAAAATAGACCTCAAGATTGAAGGTGTAAGATCTGATCACTCCATGAGAATAATTCGAAATTCTCTTGAAGCTCTCCCCGGTGTTCAAGGCATACAAGTGTCTCCTGATCATACAAAGATTTCACTTTCTTACAAACCAGATTTGACAGGACCAAGGACTTTCGTTAATGTAGTTGAGAAAACTGGCTCAGGCCGTTTCAAGGCAAAAATATTTCCTCAAGAAGGAGGAAGACAAAATCTCAGGAAAGCTGAAATCAAACATTACTATAAACTCTTCCTCTGGAGTTTGATTTTTACTATTCCTGTTTTTCTTACCTCCATGGTTCTTATGTATATCCCTGGTGTTAAACACGGATTAGAAACCAAAGTTGTCAACATGCTCAATATTGGGGAAATCTTGAGGTGGGTACTTTCTACTCCTGTACAATTTATCATAGGTTGGCGCTTCTACTCTGGAGCCTATAAATCCTTGCGCCACGGGTCTGCAAATATGGATGTCTTAATTGCCTTAGGAACAAATGCAGCCTACTTCTACTCTGTGTATTCAGTAATCAGGGCTGCCACTTCTAAAGATTTCAAGGGTACAGATTTCTTTGAAACTAGTGCCATGCTTATTTCTTTTATTCTACTGGGGAAGTATCTTGAAGTTTTAGCTAAGGGAAAGACATCCACTGCAATTGCCAAGCTTATGAACTTGACACCTGCAACAGCGATTTTATTAACTTTGGAAAGTGAAGGAAACGTGATCAACGAAGAGGAAATCGATAGTCGGCTGATTCAAAAAGACGATTTCATCAAAATTCTTCCTGGTGCTAAAGTAGCTTCAGACGGTATTGTTATCTGGGGCCAGAGCCATGTGAATGAGAGTATGATTACTGGAGAGGCACGTCCAGTAGCAAAGAGGAAGGGTGATTTAGTCATTGGTGGAACTTTGAATGAGAACGGGGTACTTCATGTCAAGGCAACTCGGGTTGGATCGGAGAGTGCTCTTGCACAAATTGTTCGACTAGTTGAGTCTGCCCAGATGGCTAAAGCGCCGGTCCAGAAATTTGCAGACCGCATTTCCAGATACTTTGTTCCTCTGGTCATAATGATTTCATTTACCACTTGGTTAATCTGGTTCTTGTCTGGAAAATATCATTGGTATCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTGAGCTGGCCCTGCAGTTCGGGATTTCTGTCATGGTTATTGCCTGCCCTTGTGCGCTTGGTCTTGCAACCCCAACTGCGGTCATGGTTGGCACCGGGGTTGGTGCCTCTCAAGGTGTGCTGATCAAAGGAGGCCAAGCTTTAGAAAGTGCTCATAAGGTGAACTGCATTGTATTTGACAAGACGGGGACTCTCACAATTGGGAAGCCTGTGGTAGTTAACACAAAGCTGCTAACAAATATGGTACTGAGCCAATTCTATGAACTCGTTGCTGCAGCTGAGGTGAACAGTGAACACCCCCTTGCTAAGGCAATTGTTGAGTATGCTAAAAGATTTAAGGATGAGGAAAACCCTGCTTGGCCAGAGGCACGGGAGTTTGTCACTGTCACTGGCCATGGAGTAACGGCCACTGTTTGGAACAAGGAAATATTAGTGGGGAATAAGAGCTTGATGATAAAACACAATGTTCTCATTCCTGCTGATGCCGAGGACATACTTGCAGAAAGTGAAGAAATGGCTCAAACTGTAATTTTGGTATCAATAAATGGGGAATTGACCGGCATGATAGCTGTGTCGGATCCAATAAAACCTGGCGCTCAAGATGCCATTGCTATCCTCAAGTCTATGAAAATTAGGAGCATCATGGTCACGGGTGATAACTGGGGAACTGCTAATTCGATTGCAAAAGAAGTTGGAATCGAAACAGTTATTGCTGAGGCTAAACCAGATCAAAAGGCAGAGAGAGTAAAGGAGTTACAGGCTGAAGGATACACAGTGGCAATGGTGGGGGATGGCATCAATGACTCTCCAGCGCTTGTCGCAGCAGATGTGGGAATGGCAATCGGTGCTGGCACTGATATTGCTATCGAGGCAGCGGACATTGTTCTAGTGAAAAGCAACCTGGAGGATGTCATAACTGCCATTGACCTTTCCCGGAAAACGTTTTGGCGGATTCGTCTGAATTACGTCTGGGCTTTGGGTTACAATATGTTGGGCATTCCAATTGCTGCTGGAGTTCTTTACCCATCTACCAGATTCAGGTTACCCCCATGGATTGCTGGTGCTGCTATGGCAGCTTCTTCTGTTAGCGTTGTCTGCAGTTCGCTATTGCTGAAATACTACAGAAGACCAAAGAAACTTGACAACCTTGAGATTCGTGGAATAAGGGTTGAGTAA 2970 0.4512 MASKMLALSCIRNESLGDLSPRPHYPSMPRYPKGVCGEGSSGVALDLEGSESKTVLSVMGMTCSACAGSVEKAIKRLPGIREAVVDVLNNRAQVLYYPAYVNEETIRETIEDVGFEATLIADESNERSVKVCRIHIHGMTCTSCSSTIESALQATHGVHKAQVALATEEAQIQYDPNVVSCDQLLEAVQDTGFEGTLISSGEDMSKIDLKIEGVRSDHSMRIIRNSLEALPGVQGIQVSPDHTKISLSYKPDLTGPRTFVNVVEKTGSGRFKAKIFPQEGGRQNLRKAEIKHYYKLFLWSLIFTIPVFLTSMVLMYIPGVKHGLETKVVNMLNIGEILRWVLSTPVQFIIGWRFYSGAYKSLRHGSANMDVLIALGTNAAYFYSVYSVIRAATSKDFKGTDFFETSAMLISFILLGKYLEVLAKGKTSTAIAKLMNLTPATAILLTLESEGNVINEEEIDSRLIQKDDFIKILPGAKVASDGIVIWGQSHVNESMITGEARPVAKRKGDLVIGGTLNENGVLHVKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISRYFVPLVIMISFTTWLIWFLSGKYHWYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVVVNTKLLTNMVLSQFYELVAAAEVNSEHPLAKAIVEYAKRFKDEENPAWPEAREFVTVTGHGVTATVWNKEILVGNKSLMIKHNVLIPADAEDILAESEEMAQTVILVSINGELTGMIAVSDPIKPGAQDAIAILKSMKIRSIMVTGDNWGTANSIAKEVGIETVIAEAKPDQKAERVKELQAEGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSNLEDVITAIDLSRKTFWRIRLNYVWALGYNMLGIPIAAGVLYPSTRFRLPPWIAGAAMAASSVSVVCSSLLLKYYRRPKKLDNLEIRGIRVE* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01860 989 ProSitePatterns Heavy-metal-associated domain. 136 165 IPR017969 GO:0046872
Pte17g01860 989 ProSiteProfiles Heavy-metal-associated domain profile. 130 196 IPR006121 GO:0046872
Pte17g01860 989 SUPERFAMILY HMA, heavy metal-associated domain 49 123 IPR036163 GO:0046872
Pte17g01860 989 CDD P-type_ATPase_Cu-like 297 956 - -
Pte17g01860 989 ProSitePatterns Heavy-metal-associated domain. 58 87 IPR017969 GO:0046872
Pte17g01860 989 FunFam Probable copper-transporting ATPase HMA5 755 917 - -
Pte17g01860 989 CDD HMA 136 194 IPR006121 GO:0046872
Pte17g01860 989 Gene3D - 424 546 - -
Pte17g01860 989 Pfam haloacid dehalogenase-like hydrolase 652 874 - -
Pte17g01860 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 658 664 IPR018303 -
Pte17g01860 989 FunFam Copper-transporting ATPase 1, putative 424 546 - -
Pte17g01860 989 NCBIfam heavy metal translocating P-type ATPase 369 969 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pte17g01860 989 SUPERFAMILY Calcium ATPase, transduction domain A 456 542 IPR008250 -
Pte17g01860 989 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Pte17g01860 989 PRINTS P-type cation-transporting ATPase superfamily signature 656 670 - -
Pte17g01860 989 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Pte17g01860 989 PRINTS P-type cation-transporting ATPase superfamily signature 492 506 - -
Pte17g01860 989 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Pte17g01860 989 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Pte17g01860 989 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Pte17g01860 989 SFLD p-type atpase 638 912 IPR044492 -
Pte17g01860 989 Gene3D - 48 120 - -
Pte17g01860 989 PRINTS Copper-transporting ATPase 1 signature 53 78 - -
Pte17g01860 989 PRINTS Copper-transporting ATPase 1 signature 79 102 - -
Pte17g01860 989 PRINTS Copper-transporting ATPase 1 signature 108 128 - -
Pte17g01860 989 PRINTS Copper-transporting ATPase 1 signature 154 175 - -
Pte17g01860 989 Pfam Heavy-metal-associated domain 134 194 IPR006121 GO:0046872
Pte17g01860 989 Pfam Heavy-metal-associated domain 56 116 IPR006121 GO:0046872
Pte17g01860 989 CDD HMA 55 118 IPR006121 GO:0046872
Pte17g01860 989 FunFam Copper-transporting ATPase HMA5 51 122 - -
Pte17g01860 989 Gene3D - 623 917 IPR023214 -
Pte17g01860 989 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 986 - -
Pte17g01860 989 SFLD Haloacid Dehalogenase 638 912 - -
Pte17g01860 989 Pfam E1-E2 ATPase 455 634 - -
Pte17g01860 989 SUPERFAMILY HMA, heavy metal-associated domain 200 268 IPR036163 GO:0046872
Pte17g01860 989 NCBIfam HAD-IC family P-type ATPase 409 939 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pte17g01860 989 SUPERFAMILY HMA, heavy metal-associated domain 129 201 IPR036163 GO:0046872
Pte17g01860 989 ProSiteProfiles Heavy-metal-associated domain profile. 205 271 IPR006121 GO:0046872
Pte17g01860 989 NCBIfam copper ion binding protein 54 117 IPR006122 GO:0005507
Pte17g01860 989 NCBIfam copper ion binding protein 134 194 IPR006122 GO:0005507
Pte17g01860 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 404 918 IPR023298 -
Pte17g01860 989 SUPERFAMILY HAD-like 655 966 IPR036412 -
Pte17g01860 989 Gene3D - 130 200 - -
Pte17g01860 989 Gene3D - 201 275 - -
Pte17g01860 989 Gene3D - 663 739 IPR023299 GO:0000166
Pte17g01860 989 Gene3D - 740 791 IPR023299 GO:0000166
Pte17g01860 989 FunFam Copper-transporting ATPase HMA5 129 200 - -
Pte17g01860 989 CDD HMA 208 267 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01860 Pte-Chr17 31965923 31970662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01860 1 989 Primary Pumps ATPases AT1G63440 75.201 0.0 1534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01860 K17686 - qsa:O6P43_034232 1608.58