Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01846 ATGCAAGAACCAAGTCTGGAAATGATGGGTGGATCAGGTGGAGGCTTAGATGGAGAATTTTTAGTCTCCGGCAACCATAACCGACAGCTCAAGGCTGAGATAGTCACACACCCACTGTGCGAGCAGCTTCTAGCCGCCCACGTAGCCTGCCTACGGGTTGCTACGCCGATTGACCAGTTGCCGCTGATAGACGCTCATTTATCGCACTCACATGATCTTCTGCGGTCTTATGCTTCTCAGAATAGTCATACCCTTTCCCCTCACGAGCGTCAAGAGCTTGACGACTTCTTGACACAGTATGTGATAGTTTTGTGCACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTTCATGCAGTTGAAGCTGTCATGGCCTGCCGTGATATTGAGAATACATTGCAAGCACTCACAGGAGTAAGTCTTGGAGAGGGCAATGGTGCCACAATGTCAGATGATGAGGATGACTTGCACATGGATTTTTCTATGGATCACTCTGGCAGTGATGGCCATGACTTAATGGGATTCGGTCCTTTACTTCCCACTGAATCTGAGAGGTCACTGATGGAAAGAGTTCGTCAAGAACTGAAGATTGAATTGAAGCAGGGTTTTAAGTCCAAAATTGAAGATGTTAGAGAAGAAATTTTAAGAAAAAGACGAGCTGGGAAGCTACCTGGTGACACAACTACGGTGCTGAAAAATTGGTGGCAGCAACATTCCAAGTGGCCTTATCCAACTGAAGATGATAAGGCTAAGCTAGTGGAGGAAACCGGTTTGCAGCTGAAGCAAATTAACAATTGGTTCATCAATCAAAGAAAGCGCAACTGGCACAACTCTCAATCTGTGACGTCTTTGAAGTCCAAGCGGAAGAGGTAA 873 0.4605 MQEPSLEMMGGSGGGLDGEFLVSGNHNRQLKAEIVTHPLCEQLLAAHVACLRVATPIDQLPLIDAHLSHSHDLLRSYASQNSHTLSPHERQELDDFLTQYVIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGNGATMSDDEDDLHMDFSMDHSGSDGHDLMGFGPLLPTESERSLMERVRQELKIELKQGFKSKIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNSQSVTSLKSKRKR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01846 290 Pfam KNOX1 domain 30 71 IPR005540 GO:0003677|GO:0005634
Pte17g01846 290 Gene3D - 213 287 - -
Pte17g01846 290 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Pte17g01846 290 SUPERFAMILY Homeodomain-like 216 279 IPR009057 -
Pte17g01846 290 FunFam homeobox protein knotted-1-like 3 isoform X1 215 276 - -
Pte17g01846 290 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Pte17g01846 290 SMART KNOX2_2 83 138 IPR005541 GO:0003677|GO:0005634
Pte17g01846 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 276 - -
Pte17g01846 290 SMART HOX_1 216 281 IPR001356 GO:0003677
Pte17g01846 290 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Pte17g01846 290 SMART KNOX1_2 28 72 IPR005540 GO:0003677|GO:0005634
Pte17g01846 290 Pfam KNOX2 domain 86 137 IPR005541 GO:0003677|GO:0005634
Pte17g01846 290 CDD homeodomain 217 278 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01846 Pte-Chr17 31844886 31848315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01846 1 291 Homeobox Transcription Factor Family AT1G62990 78.983 1.15e-168 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte17g01846 KNOX2 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01846 - - qsu:111989291 506.138