Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01844 ATGGCTTCCGTCCTTAAAGTTTGCATCCTGACCTTCTTCTCTATGGCGCTTACAATGGCAATCATTGCCAAACCAACAGTTGCTGTAATATTTCGTCCAAGCCCGTGGCTTATTGCCCATGCTACATTTTATGGTGACGAGACTGCATCTGCAACAATGGGTGGAGCATGTGGTTATGGAAATTTGTTCAGCAACGGGTACGGTACAGACACTGTTGCTTTGAGCTCCACATTGTTTAACAATGGGTACGCTTGCGGAACATGCTTCCAGATCAAATGTGTGCAATCCAGTGCTTGCTACAAAGGAGTGCCTTTCACCACCGTCACTGCCACAAACTTGTGCCCTCCCAATTGGGCCCAAGCCTCTGATAACGGTGGTTGGTGCAACCCTCCTAGAGTACATTTTGACATGTCCAAACCTGCCTTCATGAAGATTGCTCAGTGGAAGGCTGGCATTGTCCCTGTCATGTACCGTAGAGTGCCATGCATTAGACGAGGAGGGCTCAGATTTTCTTTTCAAGGAAACGGATATTGGTTATTAGTATATGTGATGAACGTTGGGGGTGCAGGAGATATTGCCAACATGTGGGTCAAGGGAAGCAGAACAGGTTGGATTAGTATGAGTCATAACTGGGGAGCGTCGTACCAGGCATTTGCAACTCTTGCAGGCCAAACTCTTTCTTTCAGGGTAACTTCTTATACAACCAAGGAGACAGTTATAGCATGGAACGTTGCCCCTTCCAATTGGCGAGTAGGATTGACCTACAACTCCGGCGTCAACTTTCACTGA 789 0.4728 MASVLKVCILTFFSMALTMAIIAKPTVAVIFRPSPWLIAHATFYGDETASATMGGACGYGNLFSNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSSACYKGVPFTTVTATNLCPPNWAQASDNGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCIRRGGLRFSFQGNGYWLLVYVMNVGGAGDIANMWVKGSRTGWISMSHNWGASYQAFATLAGQTLSFRVTSYTTKETVIAWNVAPSNWRVGLTYNSGVNFH* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01844 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Pte17g01844 262 CDD DPBB_EXPA_N 35 162 - -
Pte17g01844 262 SMART dpbb_1 71 157 IPR007112 -
Pte17g01844 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Pte17g01844 262 Gene3D - 168 262 IPR036749 -
Pte17g01844 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Pte17g01844 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Pte17g01844 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Pte17g01844 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Pte17g01844 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Pte17g01844 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Pte17g01844 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Pte17g01844 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Pte17g01844 262 Gene3D - 21 162 IPR036908 -
Pte17g01844 262 PANTHER EXPANSIN-A15 16 257 IPR002963 GO:0009664
Pte17g01844 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Pte17g01844 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Pte17g01844 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Pte17g01844 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Pte17g01844 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Pte17g01844 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Pte17g01844 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Pte17g01844 262 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Pte17g01844 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01844 Pte-Chr17 31837931 31839698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01844 12 263 Expansin Gene Family AT1G12560 69.841 4.04e-131 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01844 - - tcc:18606420 473.011