Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01842 ATGGATTTGATTCCGTCCATGTTCGAATTCGATCTGACTGATGAGCTGTTTCAAACTTTTTCCTATCCCTGCCAGTGCCAATCCTATTCCCCACAACAACAAGAAACACAGCTTCTTTCTCCTACTGAGCTGGTTGACGAACAACTTAACTCAGATAATAAGCCGGCTTCGGGTGGCCGGCACCGTCGTCCGTGTAAAGCATCAAAGGTTTTAGACGAAATGAATGATGACCGTCCTGCCCAAACTAAAAAGAAGATACTGCATAGAGATATTGAACGACAAAGAAGGCAGGAAATGGCCACTCTCTATGCTTGTTTAAGATCAGAACTCCCTCTCGAATACCTCAGGGGGAAGCGTTCTATATCTGATCACATGTACCAAGCAGTCAATTATATAAGGCATTTACAGAAAAACATCCAAGTGCTGAGTCGTAAGAAAGATGATCAGTTGCTCAGAAATATGACACATTATTGCCATTCCAAGTCGGACAATTTACAAGCCTCCACAGTGCTGCCGGATTCTTTAACAGTTACGCCTTGTTCGAGTGGAATTAAAGTCGTCATGAATACTGCTGTAACACAAGGGATTCCTCTCTCAAGAGTGCTTCGAATTCTAATTGAAGAAGGTTTAAGCATTTTCAGTTGCATCTCAACGAAAGTAAATGAGAGGTTGCTTCACAGCATTGAATCAGAGGCAAGTGATGGAAGAAGCATCCAACCATCTGAAATACATCAGAAACTGACAGAAACTTTGAGAAAATCTCACAATGGAGTTTGA 777 0.4196 MDLIPSMFEFDLTDELFQTFSYPCQCQSYSPQQQETQLLSPTELVDEQLNSDNKPASGGRHRRPCKASKVLDEMNDDRPAQTKKKILHRDIERQRRQEMATLYACLRSELPLEYLRGKRSISDHMYQAVNYIRHLQKNIQVLSRKKDDQLLRNMTHYCHSKSDNLQASTVLPDSLTVTPCSSGIKVVMNTAVTQGIPLSRVLRILIEEGLSIFSCISTKVNERLLHSIESEASDGRSIQPSEIHQKLTETLRKSHNGV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01842 258 MobiDBLite consensus disorder prediction 65 79 - -
Pte17g01842 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 135 IPR011598 GO:0046983
Pte17g01842 258 CDD bHLH_AtORG2_like 84 148 - -
Pte17g01842 258 MobiDBLite consensus disorder prediction 48 79 - -
Pte17g01842 258 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 67 248 - -
Pte17g01842 258 Gene3D - 75 169 IPR036638 GO:0046983
Pte17g01842 258 Pfam Helix-loop-helix DNA-binding domain 85 136 IPR011598 GO:0046983
Pte17g01842 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01842 Pte-Chr17 31829569 31830573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01842 88 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.765 1.75e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g01842 HLH 9.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01842 - - qsa:O6P43_024256 211.846