Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01821 ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTCAAGAAAGGTCCGTGGACCGCGGAGGAAGACAAGAAGCTCATCACCTTTATTCTCACAAATGGTCAGTGCTGCTGGCGTGCTGTCCCCAAGCTTGCTGGCCTTCGACGTTGTGGAAAGAGTTGCCGCCTCCGCTGGACAAACTATCTCCGCCCTGACTTGAAGAGAGGACTGCTTTCAGAAGCTGAGGAGCAACTGGTTATTGACCTTCATGCCCGACTTGGCAATAGGTGGTCGAAAATTGCAGCCATATTACCTGGAAGGACCGACAATGAGATAAAAAATCACTGGAACACCCACATCAAGAAAAAGCTATTTAAGATGGGAATCGATCCTGTCACTCACGAGCCACTTGATAACAAGCAGCAAGCAATGCACAAGAAAGCGTCCCCCACCGAACAGTCTTCTCTATCAGAAAACCATCTTCCCGAAGAAAGTGAGGGATCCGTAGTCAATCATAATTCAGAGGAGAGCACGAACTCAAATTCCCCGACTGAAAACTTTGTTGGCGATGACTCCTCCATCTTGCTGGACAGCGTTTGTAGTGATGAGTCTTTGATGAACAGCCTGTGGCTAAAGGAAACTGCCCTAGTCGATGAATTATGGGACAATATTCCAGGAAAGGATAATGCTCCAGAGACAGGCTTGCAGACATGGGAGGATGATTGTAATAATTGGTTCATGGACTGCCACGATTTTGGCCTTCAGGATTTTGGTTTTAATTGCTTCCATGATATGGAATCGAATGCGTTATTAAACACCATACTTATGGAAGAAAACCATTAA 819 0.4664 MGRQPCCDKLGVKKGPWTAEEDKKLITFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSEAEEQLVIDLHARLGNRWSKIAAILPGRTDNEIKNHWNTHIKKKLFKMGIDPVTHEPLDNKQQAMHKKASPTEQSSLSENHLPEESEGSVVNHNSEESTNSNSPTENFVGDDSSILLDSVCSDESLMNSLWLKETALVDELWDNIPGKDNAPETGLQTWEDDCNNWFMDCHDFGLQDFGFNCFHDMESNALLNTILMEENH* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01821 272 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pte17g01821 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte17g01821 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 180 - -
Pte17g01821 272 CDD SANT 16 61 IPR001005 -
Pte17g01821 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte17g01821 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte17g01821 272 Gene3D - 12 67 - -
Pte17g01821 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte17g01821 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte17g01821 272 FunFam MYB transcription factor 11 67 - -
Pte17g01821 272 FunFam MYB transcription factor 70 147 - -
Pte17g01821 272 CDD SANT 71 112 IPR001005 -
Pte17g01821 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte17g01821 272 MobiDBLite consensus disorder prediction 136 180 - -
Pte17g01821 272 SMART sant 13 63 IPR001005 -
Pte17g01821 272 SMART sant 66 114 IPR001005 -
Pte17g01821 272 Gene3D - 70 152 - -
Pte17g01821 272 MobiDBLite consensus disorder prediction 124 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01821 Pte-Chr17 31680393 31682023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01821 1 262 MYB Transcription Factor Family AT4G12350 53.310 1.46e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g01821 Myb_DNA-binding 6.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01821 K09422 - gmx:100786965 377.867