Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01817 ATGGGATCTTCAAGCCACAAAGATAAGAAGTACCCAATTAGAACTCAGACCAATAAAGCTACCAGAGCTGGGTTCTGGAAAGCTACTGGAAGAGATAAAGCCATTTACTCTCGGTGTTGTTTAGTTTGCATGAGAAAGACTCTGAAAGAAGAGCTCCTATTGGATTAA 168 0.4048 MGSSSHKDKKYPIRTQTNKATRAGFWKATGRDKAIYSRCCLVCMRKTLKEELLLD* 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01817 55 ProSiteProfiles NAC domain profile. 1 55 IPR003441 GO:0003677|GO:0006355
Pte17g01817 55 SUPERFAMILY NAC domain 5 48 IPR036093 GO:0003677|GO:0006355
Pte17g01817 55 Pfam No apical meristem (NAM) protein 5 48 IPR003441 GO:0003677|GO:0006355
Pte17g01817 55 Gene3D NAC domain 3 49 IPR036093 GO:0003677|GO:0006355
Pte17g01817 55 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01817 Pte-Chr17 31652023 31652320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01817 5 48 NAC Transcription Factor Family AT1G62700 77.273 1.99e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01817 - - qsa:O6P43_034121 80.1073