Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01808 ATGACTCGACCATTGAGAATCCTAGGAGACCTCAACTCCTCTTCGTCCGCCGCACCATCTTCACAACCAACCGACGTGCACTCCGATTACGTTGTAATCCTTGCCGCCCTTCTCTGTGCCCTAATCTGCGTTCTCGGCCTAGTCGCGGTGGTCCGTTGCGCTTGGCTCCGCCGCATATACGGAGGAACTAGCTCCCGTACAGGTACCGAAACCTCCGCTATACCACGGACGACAGCACCTGCCAACAAAGGCCTCAAGAAGAAGATCCTCCGCACCCTCCCTAAGCTCGTCCTCACTTCTGAATCTGCTTGCAAATTCTCTGACTGTGCCATTTGCTTGAGCGAATTTGCGGTTGATGACGAAATCAGAGTGCTTCCTCAGTGCGGTCATGGCTTCCATGTGTCTTGTATTGACACATGGCTTGGATCCCATTCTTCCTGCCCTTCCTGCCGTCAGGTCTTCGTTATGGCTAGATGCGACAAATGCGGTGGCTTCCCAGCTGGGACTCGCACTGCTTCGGCTGCTGCTAGCTCCAGCAGCACGAGATCTCAATCTGAAACTGCATTTAAGCAAAGAGAAGACCATGCAAACCGGTTCTTGCCCTAG 606 0.538 MTRPLRILGDLNSSSSAAPSSQPTDVHSDYVVILAALLCALICVLGLVAVVRCAWLRRIYGGTSSRTGTETSAIPRTTAPANKGLKKKILRTLPKLVLTSESACKFSDCAICLSEFAVDDEIRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQVFVMARCDKCGGFPAGTRTASAAASSSSTRSQSETAFKQREDHANRFLP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01808 201 CDD RING-H2_EL5-like 108 151 - -
Pte17g01808 201 SMART ring_2 109 150 IPR001841 -
Pte17g01808 201 SUPERFAMILY RING/U-box 95 157 - -
Pte17g01808 201 Pfam Ring finger domain 108 151 IPR001841 -
Pte17g01808 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 155 IPR013083 -
Pte17g01808 201 MobiDBLite consensus disorder prediction 187 201 - -
Pte17g01808 201 MobiDBLite consensus disorder prediction 171 201 - -
Pte17g01808 201 MobiDBLite consensus disorder prediction 171 186 - -
Pte17g01808 201 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Pte17g01808 201 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 19 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01808 Pte-Chr17 31583543 31584928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01808 5 202 C3H Transcription Factor Family AT1G20823 54.500 9.39e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01808 - - qsa:O6P43_016388 248.825