Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01794 ATGAAAGGTGGAAGGTCAAAGGGCGAATCAAAGAAGGCCGACGCTAAGCTTGCTGTGAATAAGAACGCAATCACCAAGGGTGGGAGGAAGGCAGCTAAGGGAAAGGCGGCAAAGGATCCCAACAAGCCAAAGAGGCCTGCCAGTGCTTTCTTCGTATTCATGGAGGATTTCAGGAAGCAGTTTAACAAAGAAAATCCTGGAAACAAAGCCGTGTCTGCTGTTGGTAAAGCTGCTGGAGCTAAATGGAAGACCATGTCTGATGCTGTGAGAAATAAACTTTGTTTTAATTTTGGTATAACATTTGAAACGATGGTCAGCGACCAATTTTAG 330 0.4485 MKGGRSKGESKKADAKLAVNKNAITKGGRKAAKGKAAKDPNKPKRPASAFFVFMEDFRKQFNKENPGNKAVSAVGKAAGAKWKTMSDAVRNKLCFNFGITFETMVSDQF* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01794 109 SUPERFAMILY HMG-box 30 91 IPR036910 -
Pte17g01794 109 CDD HMG-box_AtHMGB1-like 44 88 - -
Pte17g01794 109 SMART hmgende2 42 99 IPR009071 -
Pte17g01794 109 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 90 IPR031061 -
Pte17g01794 109 MobiDBLite consensus disorder prediction 1 16 - -
Pte17g01794 109 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 92 IPR009071 -
Pte17g01794 109 MobiDBLite consensus disorder prediction 1 45 - -
Pte17g01794 109 Pfam HMG (high mobility group) box 43 92 IPR009071 -
Pte17g01794 109 Gene3D High mobility group box domain 27 94 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01794 Pte-Chr17 31477533 31478976 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte17g01794 HMG_box 4.5e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01794 K25507 - qsa:O6P43_018776 130.568