Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01785 ATGGAAGATGGTGCCTTTTCACCTCTTAACGTCTCTGAAACTTTACCTGGTTTCTCCATGGACTTGGACTGCATGGACGAACTGTTTCTAGATGGTTGCTGGCAGGAAACCACTAATGGATCCGAATTCCTAAATCAGGGTCCCTCTGATCCTAATTCCCTCTATGACCCTTCTTCACTTGTGTGGCCTACTTTGGAGACAGGTGATGTTCGAGTGAGTCATTCTCTGATGGACAACCAAGACGAGGTGGTGACGGCTCTATGTGCTACTCAGAACATGGAGAGTGTTCCTGACTTCACCAAGAACTCTGATACTTATTCAGTTGAAGATCCTGAAACATGGAAAAGGTTGTGGATTGCACCCAGAAGTAGTCCAGGTCCTGCATATTCTATGACAGATAGAATGATTAGGGCCCTTTCGTACATGAAAGAATTTATCAGAGATAAGGAGTTCCTTGCACAAATATGGGTGCCCGTGAATAGATGTGGTAAGCTTGTTCTAAGAACTAACAATCTGCCATTCTCCCTTGATAATACCTGCACAAGGCTTTTGAGATACCGTGATATTTCGGTAAAATATCAGTTCAAAGCTGAAGAAGATTCTAAGGAATTGATGCTCGGATTGCCTGGCCGGGTTTTCTTGAGTAAGGTGCCTGAGTGGACTCCTGATGTTCGGTTTTTCAGAAGCGATGAGTATCCACGAGTTGACTATGCTCAACAGTTTGATGTCCGTGGAACGCTAGCTCTTCCTGTTTTTGAACAAGGAAGCAGGACTTGCTTGGGTGTTGTAGAGGTCGTGATGACAACTCAACAGATCATGTATCGGCCTGAACTTGAGAGTGTCTGCAGAGCCCTTGAGGCTGTTAATCTTAGGAGCTCTGATTTCTTGAACATTCAAAACGAAAAGGTTTTCAGGGCTTCTGAAACTGTATTGCCCGAGATTAAAGAGGTATTGAGGTCTGCATGTGAAATGCACAAATTGCCCTTAGCACAAACTTGGGTAGCTTGCGTGCCCCAAGGTAAAGAAGGCTGCCGGCACTCTACGGAAAACTATGATAACTGTGTATCCACTGTGGATCGTGCTTGCTACATAGGTGATCCCAGTGTTCAACTATTTCATGAGGTTTGCTCTGAGCATCACTTGTTGAAAGGTCAAGGTGTTGCTGGGAGAGCATTTACGACTAATCAACCATGCTTCTCAGATGACGTGACATCCTTTAGCAAGACAGATTATCCACTGTCTCACCATGCCAGAGTGTTTAATTTGCGTGCTTCTGTTGCAATACGCCTTCGAACTATTCACGCTGGAAAAGATGATTATGTGTTGGAGTTTTTCTTGCCTACAGATTGCATTGATCCTCAAGAACAGAAGGAGGTGCTTGTATCACTATCCATGCTAATCCAACGTGTTTGCCATAACTTGCGCGTCTTAACGGATGAGGAAATTGAGGAAGGAAATAACTTGCTTGTAAAAGACGCTACTGTCCCTATGGATGTCAGATCTGTTAGGTCTGCTAATAAGATAGAGCTTCAAGGGAGTAGTTCTATTCCTCCATCAAGTGCCGAGTGCAAATCAAGTGACAAAATGACTGCAAAAACATCAGAGCCAAGGCACCATCAAGATCCTTCAAACTTGAAAGGGTGTATTACGTTGGATGAGGAATATTCTACTTTATGCAATGTGAGAGTTGGCAAAACTGGAGAAAAGAGACGCACCAAGGCTGAAAAAACTGTCACCTTGCAAGTTCTTAGGCAATATTTTGCTGGAAGCCTAAAAGATGCCGCAAAAAGTATTGGAGTTTGTACAACTACTTTGAAGAGGATCTGCAGACAGCATGGAATCAAGCGTTGGCCTTCTCGAAAAATAAAAAAGGTGGGCCACTCCCTACAGAAGCTCCAGCGTGTGATTGATTCAGTTCAAGGAGCATCAGGTGGCTTTCAAATCGATTCCTTCTATTCAAAGTTTCCGGAACTTGCATCTCCAAACGTGTCGGGGACCAGTCCATTCTCTTCATTAAAGCAAATTGAAAACTCAGAGCTCCCAAATATGCAGCCGGAAACTGGAAGTCAGTTAAACCCGCAAGCTGCTGCATCAAAATCACCCTCATCGCCATGCAGTCAGAGTTCCTATTCTAGTCATTCCTACTCCAGCAGGACAGAGCAAAGCCCTCCTCCCTTAAATGATGGTAGCAGTAGCAAAAGTACCAATGCCGAAGAAAGCATCGAAGAGGGTGTGCTTAAGAGGGTCAGAAGTGAAGTTGAGATGAAGACTTCAATTCCAGAATTATTACAAGTAATGCCAAGATGCCACAGCCATGAAACCTTCAGTCACCACCTGAAAATTGGGTCTATGAGCTCCTTACCAAAGAGCAGGAGTAAAACAAGTGAAATTGGAGAAGTGCCTCGTGTAAAAGTCACGTGTGGAGATGACAAAGCCCGGTTCCGCATGCAGACCGGTACAAGTTACGGGGGTCTGCTGCAAGAAATTGCTAGGAGATTCAACATAGACGACATGAGCAAGTACACTGTTAAGTACTTGGATGATGACACCGAGTGGGTCTTGTTGTCATGTGATGATGACTTGCAGGAGTGTTTTGATGTTTGTAAATCTTCCAAAAGTCGCACCATCAAATTGTCTCTTCATCTCTCTAATCATCGTTGGAGGAATATTTGA 2673 0.4411 MEDGAFSPLNVSETLPGFSMDLDCMDELFLDGCWQETTNGSEFLNQGPSDPNSLYDPSSLVWPTLETGDVRVSHSLMDNQDEVVTALCATQNMESVPDFTKNSDTYSVEDPETWKRLWIAPRSSPGPAYSMTDRMIRALSYMKEFIRDKEFLAQIWVPVNRCGKLVLRTNNLPFSLDNTCTRLLRYRDISVKYQFKAEEDSKELMLGLPGRVFLSKVPEWTPDVRFFRSDEYPRVDYAQQFDVRGTLALPVFEQGSRTCLGVVEVVMTTQQIMYRPELESVCRALEAVNLRSSDFLNIQNEKVFRASETVLPEIKEVLRSACEMHKLPLAQTWVACVPQGKEGCRHSTENYDNCVSTVDRACYIGDPSVQLFHEVCSEHHLLKGQGVAGRAFTTNQPCFSDDVTSFSKTDYPLSHHARVFNLRASVAIRLRTIHAGKDDYVLEFFLPTDCIDPQEQKEVLVSLSMLIQRVCHNLRVLTDEEIEEGNNLLVKDATVPMDVRSVRSANKIELQGSSSIPPSSAECKSSDKMTAKTSEPRHHQDPSNLKGCITLDEEYSTLCNVRVGKTGEKRRTKAEKTVTLQVLRQYFAGSLKDAAKSIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQRVIDSVQGASGGFQIDSFYSKFPELASPNVSGTSPFSSLKQIENSELPNMQPETGSQLNPQAAASKSPSSPCSQSSYSSHSYSSRTEQSPPPLNDGSSSKSTNAEESIEEGVLKRVRSEVEMKTSIPELLQVMPRCHSHETFSHHLKIGSMSSLPKSRSKTSEIGEVPRVKVTCGDDKARFRMQTGTSYGGLLQEIARRFNIDDMSKYTVKYLDDDTEWVLLSCDDDLQECFDVCKSSKSRTIKLSLHLSNHRWRNI* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01785 890 MobiDBLite consensus disorder prediction 528 542 - -
Pte17g01785 890 ProSiteProfiles RWP-RK domain profile. 564 645 IPR003035 -
Pte17g01785 890 SUPERFAMILY CAD & PB1 domains 791 885 - -
Pte17g01785 890 Gene3D - 798 881 - -
Pte17g01785 890 MobiDBLite consensus disorder prediction 680 749 - -
Pte17g01785 890 ProSiteProfiles PB1 domain profile. 800 883 IPR000270 GO:0005515
Pte17g01785 890 SMART PB1_new 800 883 IPR000270 GO:0005515
Pte17g01785 890 MobiDBLite consensus disorder prediction 680 739 - -
Pte17g01785 890 MobiDBLite consensus disorder prediction 509 527 - -
Pte17g01785 890 MobiDBLite consensus disorder prediction 509 545 - -
Pte17g01785 890 CDD PB1_NLP 802 881 IPR034891 -
Pte17g01785 890 Pfam PB1 domain 802 881 IPR000270 GO:0005515
Pte17g01785 890 Pfam RWP-RK domain 577 625 IPR003035 -
Pte17g01785 890 PANTHER PROTEIN NLP8 103 882 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01785 Pte-Chr17 31411379 31416132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01785 1 887 NLP Transcription Factor Family AT1G20640 47.519 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pte17g01785 PB1 4.2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01785 - - qsa:O6P43_016365 1004.59