Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01706 ATGAGTCAACAAAGAACGTACAATTTGAAAAGTTATTTATTTATCGTGTCAGTGAGTGATGGCCATGTAGAACTTACTGCATGTGGTTTGTACTCCATGCATGAGCAGGTTGCAGCTTCCACCAAAAGAACGTCAACCTCGCAGATGCCCAACTATCCCAATCTCCCATCTCAACTATTATGCCAAGTTCAAAATGTTACGCTTCATGCAGACAAAGATACAGACGAAATCTACGCACAGATGAGCCTCCAACCCGTGAATTCTGAACAAAATGCATTCTCTGTACCTGATTTTAGGTTAAAGCCAAGCAAGCACCCTTGCGAGTTTTTCTGCAAGACTTTGACAGCGAGTGACACTAGCACACATGGTGGCTTCTCAGTGCCTCGTAGGGCAGCAGAGAAGCTCTTCCCCGCATTGGACTACACAATTCAGCCACCAAGTCAAGAACTCGTTGTACGAGACTTGCATGAGAATATATGGACGTTTCGACACATATACCGCGGCCAGCCAAAGAGGCATCTTCTTACAACTGGATGGAGCCTTTTTGTTGGTTCCAAAAGGCTCAGAGCAGGTGATTGCGTTCTTTTTATCAGGGACGAGAAATCCCAATTACTAATTGGAGTAAGGCGTGCTAGTCGGCAGCAAACAACGATGCCTTCCTCCGTTCTTTCGGCTGATTGCATGCACATTGGTGTTTTAGCTGCTGCAGCTCATGCTGCTTCTAACAGAACTCCATTCACCATATTCTACAACCCCAGGGCCTGTCCTTCAGAATTTGTCATTTCACTGACTAAATACAGAAAAGCTGTATTTGGGACTCAGTTGTCAGTAGGCATGAGATTTGGGATGATGTTTGAAACAGAGGAATCAGGCAAGCGGAGATATATGGGTACGATCATTGGTGTTAGCGACCTGGATGCTTTGCGATGGCCTGGTTCTAAGTGGCGAAACATTCAGGTTGAGTGGGACGAGGCAGGTTGTGGAGATAAACCAAAAAGAGTTAGTTCTTGGGAAATTGAGGCTCCAGAAAACTTATTTATCTTTCCTTCTTTGACTTCTGGTGTCAAACGGCCCCTGTATTCTGGATTTTTTCGCGGAGAAACTGAGAGAGGAATCTCAATGAGAAGACCTTTTGTATGTGGTCCTGAAAATGCAAATGTCGATATTCCGTATTTTCTGCCTTATCAGTATTCAGAACATTTAATCAAAACATTAAAATCTCAACCTTCAATGGATACTGGAAATTTTTCATCTGGCGTGCAACAAGAATTTACTGCAAAGCTAGATCTATCTCAAGATGCAAGGGCTATGCTGCTGACGAACAACCATTTTTCTCATCCCAAATATTCAGAGACCGTGGAACTACAACAGCATGTAACTAATCAATCTTCTCATGGTCAACCTGTTTGCACACATTCAAATTCATTGCCAAAGGTTGATCAATCTAGTGAACTGCAGATTGTGGCCAAAATTGGAAGTCTACCACATTCTGGTGTGATTGCCGATAGCAGTTGTACTTTGAAATCTGAGCTTTTAACTGATCAACCGACTACATGTACCTCTATTGAAGAGCATTGTGTGGAAAAACTGGCTGCAAACTCTGTCATTTCCCAAAACCATGTTGGGCAGTTAACATCTGAGAATCAGAATCAAGCTCTGCAGCAATTGCAAATTAACATTTCTGCTGGAATGACGAGACCAAGTGGAGATTTATCACTCTTAGGCTCTCAAGATCATTCTTGTAGCCTCTCTGAAGTATATGATCCCACCTTATTGTCAACGAGTCATGAAATGTTGGGCCATAATCTCGGCAATTCAAGGCCTTTTCCTCTGGCCAACCAACTCTCAGACATTTCTGATCGAGAAGCACGTGTACTTATGGGTGTACTTAGTTCAAATAACTTGAAAGATCTCTCAGATGAAAGCAAAAGCAACAACCACAGTGGGATATATGGTATTCATACTATTGATGCTAGCTGTACACATACTGCGGTTGATCCATCTGTTTCAAGTGTCATTCTAGATGACTATTGCACTTTGAAGGATGACTGCATCGTAGGCAACTTAAATTCGAGCCAAGATGTCCAATCACAGATAACTTGTGCAAGTCTGGCAGATTCTCATACTTTCTCTTGGCAAGATTTCCAGGATAACTCTGGCGGTACATCTTCAAGTAATATTTATTTAGATGAGAGTTGTCTTCCTCAAAAGGGCTCATGGCAGCAAATAACGCCACTCATCCGCACCTACACTAAGGTGCAAAAGGCAGGATCAGTTGGGAGGTCAATTGATGTCACCAATTTTAGAAACTACGGGGAACTTTGCTCTGCAATTGAGCGCATGTTTGGACTTGAAGGTCTGCTAAATGACACAAAAGAGTCAGGATGGAAATTGGTTTATGTGGATTATGAGAATGATGTCCTACTTGTTGGGGACGATCCGTGGGAGGAATTTGTTGGCTGTGTACGCTGCATTAGAATACTTTCACCTTCAGAAGTTAAGCAGATGAGCGAAGAGGGAATGAAACTTCTTAACAGTGCTGCAATGCAAGGGATGTGTGGCTCAATGTCGGGGTGA 2577 0.4288 MSQQRTYNLKSYLFIVSVSDGHVELTACGLYSMHEQVAASTKRTSTSQMPNYPNLPSQLLCQVQNVTLHADKDTDEIYAQMSLQPVNSEQNAFSVPDFRLKPSKHPCEFFCKTLTASDTSTHGGFSVPRRAAEKLFPALDYTIQPPSQELVVRDLHENIWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDCVLFIRDEKSQLLIGVRRASRQQTTMPSSVLSADCMHIGVLAAAAHAASNRTPFTIFYNPRACPSEFVISLTKYRKAVFGTQLSVGMRFGMMFETEESGKRRYMGTIIGVSDLDALRWPGSKWRNIQVEWDEAGCGDKPKRVSSWEIEAPENLFIFPSLTSGVKRPLYSGFFRGETERGISMRRPFVCGPENANVDIPYFLPYQYSEHLIKTLKSQPSMDTGNFSSGVQQEFTAKLDLSQDARAMLLTNNHFSHPKYSETVELQQHVTNQSSHGQPVCTHSNSLPKVDQSSELQIVAKIGSLPHSGVIADSSCTLKSELLTDQPTTCTSIEEHCVEKLAANSVISQNHVGQLTSENQNQALQQLQINISAGMTRPSGDLSLLGSQDHSCSLSEVYDPTLLSTSHEMLGHNLGNSRPFPLANQLSDISDREARVLMGVLSSNNLKDLSDESKSNNHSGIYGIHTIDASCTHTAVDPSVSSVILDDYCTLKDDCIVGNLNSSQDVQSQITCASLADSHTFSWQDFQDNSGGTSSSNIYLDESCLPQKGSWQQITPLIRTYTKVQKAGSVGRSIDVTNFRNYGELCSAIERMFGLEGLLNDTKESGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVKQMSEEGMKLLNSAAMQGMCGSMSG* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01706 858 SUPERFAMILY DNA-binding pseudobarrel domain 96 239 IPR015300 -
Pte17g01706 858 CDD B3_DNA 109 210 IPR003340 GO:0003677
Pte17g01706 858 Pfam Auxin response factor 236 319 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte17g01706 858 SMART B3_2 110 212 IPR003340 GO:0003677
Pte17g01706 858 FunFam Auxin response factor 108 212 - -
Pte17g01706 858 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 838 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte17g01706 858 FunFam Auxin response factor 274 346 - -
Pte17g01706 858 Gene3D - 274 345 - -
Pte17g01706 858 FunFam Auxin response factor 743 837 - -
Pte17g01706 858 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Pte17g01706 858 Gene3D - 745 837 - -
Pte17g01706 858 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Pte17g01706 858 SUPERFAMILY CAD & PB1 domains 760 827 - -
Pte17g01706 858 ProSiteProfiles PB1 domain profile. 748 832 IPR000270 GO:0005515
Pte17g01706 858 Pfam AUX/IAA family 749 835 IPR033389 -
Pte17g01706 858 Gene3D - 107 211 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01706 Pte-Chr17 30796068 30802338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01706 35 857 B3 DNA Binding Superfamily AT1G19850 57.009 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte17g01706 AUX_IAA 3.4e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01706 K14486 - qsu:112011953 969.533