Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01693 ATGGCCCGTGGTAAGATCCAAATCAAGAAGATAGAGAACCCTACTAACCGGCAGGTCACTTACTCTAAACGACGAAATGGCCTCTTCAAGAAAGCCAACGAGCTCACTGTTCTTTGTGATGCGAAAGTCTCCATTATTATGTTCTCCAGCACTCACAAGCTTCATGAGTACATAAGCCCTTCCACAACAACCAAGGAATTATATGATCAGTATCAGAGAACCGTGAGGATGGATCTATGGAGCTCACACTATGAGAAAATGCAAGACAACTTGAAGAAGCTGAATGACGTTAATAGAAATCTGCGGAAGGAGATTAGGCAGAGGATGGGTGACTGTTTGAACGATATGGGGTTTCACGATCTCAAGGCACTTGAGCAAAACATGGAGAGCGCCGTCAAGCTTATTCGTGACCGGAAGGTCCGAGTAATAACAAATCAGATTGACACTCATCGTAAGAAGCTAAGGAATGCCGAGGAAGTACATAGAAAATTTTTACACGAATTCGATACAAGAGAGGAAGATCAATATTTTGGATTAGTTGATAACGGAGGGGACTTCGATTCTGTACTCGGATTCTCAAATGATGGCCCCAGCATATTTGCACTACGCTTGGAGCCAAACCTTCCGCATGTTCGTGGTGGAACGGCAGGGTCTGACCTTACCACTTATCCGTTACTTGACTAG 684 0.443 MARGKIQIKKIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTHKLHEYISPSTTTKELYDQYQRTVRMDLWSSHYEKMQDNLKKLNDVNRNLRKEIRQRMGDCLNDMGFHDLKALEQNMESAVKLIRDRKVRVITNQIDTHRKKLRNAEEVHRKFLHEFDTREEDQYFGLVDNGGDFDSVLGFSNDGPSIFALRLEPNLPHVRGGTAGSDLTTYPLLD* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01693 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pte17g01693 227 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01693 227 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Pte17g01693 227 Coils Coil 84 104 - -
Pte17g01693 227 Coils Coil 140 160 - -
Pte17g01693 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte17g01693 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte17g01693 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte17g01693 227 Pfam K-box region 81 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01693 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte17g01693 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte17g01693 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pte17g01693 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte17g01693 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Pte17g01693 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01693 Pte-Chr17 30711430 30714050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01693 1 228 MADS-box Gene Family AT3G54340 54.506 1.22e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte17g01693 K-box 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01693 K09264 - gmx:547720 342.813