Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01685 ATGGGACAGAACCAATTTGAGAACCAACGTTTTGATGCTTATGAATCTTCGTTAAGAGGTAGTGCTGCATTTCCTCAGTCTATTGGTGTCTTGCCAAGCATTCAGGCGGAAGAGAGGATGTCTACTTCAATGGGTCTTGTACAAGCTCCAATTCTAGCAGAGGACTCTGAAATTAGCCACACAAGACATCTGATGGATCTTCTCGGAGCAGCCACTGAGAACAATCACCAAACACAGGGGCTTTCACTCTCTCTAGGTTCTTCTCGCGTGTTCGTTCCTTCTGATCAATACAGAGAGAGATCCTTGAACCCCGACCTCGTGAACTCCCATTATTTTATGGCTTCTGGAGGGCATGATCACGCCAGAGAAGCTTGTTACCGAGGAGGGGACCAAGTAACTAACGAGTATTCCAATTTCAGCAGCATCACTCCACTAAACCTGACTTCTTCCGCTTCTAGTGACTCAGAATCTTTTTCTGCTGTCATCGGGAATTCCAGATACTTAAAACCTGTGCAATCCCTTCTAGAAGAAGTTGTTGATGTCGGTGGAAAGGTTTTTGAGAACATTGAAGAAAATTACATGGTTAAGTTATATCATGAAGGAAGAATAGGGGCTCTAAGACTCTCGTCCGAGTTAAAAGCAGAGTTGTTCAATAACAGGTCTCTACCTGGGGAGAAGCATGAAGTGAAAGTGAAACTCGCAAAGCTGATTACTTTGTTAGATGAGGTGGAGAGTAGATATGAGAAGTACTACCATCAAATGCAAGAACTGGTGTCATCATTTGAGATGATAGCAGGGGTAGGAGCTGCGAGGTGTTACACAGTTTTGGCACTTCAAGCCATGTCCAGACATTTCTGCAGCTTGAGGGAATCCATAACTTGCCAAATAAACGTGGAGAAAAGAAAGCTTATGCAAGATTTACCAAAAATCAGTTCCGGCCTATCACAGCTCAGTCTGTTTGATAGAGAGGGCAGACATGGTAGGTTGTCTCTTCAACAGCTTGGATTGATCCAAAGCCAGCGCCAAGTTTGGAGACCAATCAGAGGGTTGCCAGAGACATCTGTTGCTATACTTCGTTCTTGGTTATTTGAGCACTTCCTTCACCCATATCCTAATGACAATGAGAAGCTCATGCTGGCATCACAGACCGGTCTGTCCAAAAATCAAGTTTCGAATTGGTTCATTAACGCTAGAGTTCGGTTATGGAAACCAATGATAGAGGAGATGTACAAAGAAGAATTTGGTGACTCTTCTGAAGACTCCAATGCGTCTGCCAACAATGGCAACGGCATTACAAGGGAAGGGATGTCGGATCAGGTGGAGGACTGA 1329 0.4432 MGQNQFENQRFDAYESSLRGSAAFPQSIGVLPSIQAEERMSTSMGLVQAPILAEDSEISHTRHLMDLLGAATENNHQTQGLSLSLGSSRVFVPSDQYRERSLNPDLVNSHYFMASGGHDHAREACYRGGDQVTNEYSNFSSITPLNLTSSASSDSESFSAVIGNSRYLKPVQSLLEEVVDVGGKVFENIEENYMVKLYHEGRIGALRLSSELKAELFNNRSLPGEKHEVKVKLAKLITLLDEVESRYEKYYHQMQELVSSFEMIAGVGAARCYTVLALQAMSRHFCSLRESITCQINVEKRKLMQDLPKISSGLSQLSLFDREGRHGRLSLQQLGLIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDNEKLMLASQTGLSKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNASANNGNGITREGMSDQVED* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01685 442 CDD homeodomain 344 405 IPR001356 GO:0003677
Pte17g01685 442 MobiDBLite consensus disorder prediction 419 434 - -
Pte17g01685 442 SMART prehox3 156 294 IPR006563 -
Pte17g01685 442 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Pte17g01685 442 ProSiteProfiles 'Homeobox' domain profile. 363 404 IPR001356 GO:0003677
Pte17g01685 442 Coils Coil 240 260 - -
Pte17g01685 442 SMART HOX_1 344 408 IPR001356 GO:0003677
Pte17g01685 442 Pfam Associated with HOX 161 293 IPR006563 -
Pte17g01685 442 Gene3D - 339 419 - -
Pte17g01685 442 MobiDBLite consensus disorder prediction 413 442 - -
Pte17g01685 442 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 425 - -
Pte17g01685 442 SUPERFAMILY Homeodomain-like 350 412 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01685 Pte-Chr17 30638945 30640541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01685 130 432 Homeobox Transcription Factor Family AT2G16400 45.171 6.42e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte17g01685 POX 7.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01685 - - qsa:O6P43_016216 577.785