Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01651 ATGGCGAGTGAATTTGGGAAATCAAGAAGCAGGTCGCCCCAAATCCCTTCTTGTTCGAGCAATGACAGCAATGATGCTGCCAGTTTTGAATGCAGTATTTGTTTCGACTTGGCACAAGATCCTGTTGTCACTCTATGTGGCCATCTTTTCTGCTGGCCATGCCTTTACAAATGGCTTCATTTTCATTCACAATCCCGGGAATGCCCTGTATGCAAGGCCCTCGTAGACGAGGAGAGGTTGGTTCCCTTGTATGGTAGAGGAAAGACATCAACTGACCCTAGATCCAAGTCAGTTCCTGGAATCAATATCCCAAATCGTCCAGGTGGTCAAAGACCTGAAACGGCTCCTCCACCCGAGACAAATCATTTTCCACAACATGGTTTTGGGTTCATGGGAGGATTGGGAGGTTTGGCACCAATGGCTACAGCGAGGTTTGGGAATTTTACATTGTCTGCTGCATTTGGTGGTCTCATTCCATCACTTTTTAACTTTCAAATGCATGGGTTTCCTGATGCGTCTGTTTATGGTGCTACGTCTGGCTTTCCTTATGGACTTTCGAATACCTTTAATGGGGGTCATGCTCATATGTATCAACAGCGTACTGGTGAAGGACAACAAGACCACTATCTGACTTGGCTTATTTTGTTTATACTGTTCTGTGTTGTTCTCACTATGATTTGGCAATAG 687 0.4512 MASEFGKSRSRSPQIPSCSSNDSNDAASFECSICFDLAQDPVVTLCGHLFCWPCLYKWLHFHSQSRECPVCKALVDEERLVPLYGRGKTSTDPRSKSVPGINIPNRPGGQRPETAPPPETNHFPQHGFGFMGGLGGLAPMATARFGNFTLSAAFGGLIPSLFNFQMHGFPDASVYGATSGFPYGLSNTFNGGHAHMYQQRTGEGQQDHYLTWLILFILFCVVLTMIWQ* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01651 228 MobiDBLite consensus disorder prediction 85 122 - -
Pte17g01651 228 Pfam Zinc finger, C3HC4 type (RING finger) 31 71 IPR018957 GO:0046872
Pte17g01651 228 MobiDBLite consensus disorder prediction 1 20 - -
Pte17g01651 228 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Pte17g01651 228 SMART ring_2 31 71 IPR001841 -
Pte17g01651 228 SUPERFAMILY RING/U-box 28 84 - -
Pte17g01651 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte17g01651 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
Pte17g01651 228 CDD RING-HC_AtRMA-like 29 73 - -
Pte17g01651 228 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01651 Pte-Chr17 30420488 30426265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01651 14 210 C3H Transcription Factor Family AT1G19310 66.505 2.43e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01651 K10666 - rcu:8260936 379.022