Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01639 ATGGCAATCCGTGTTACCTTCAGCTACTCCGGCTACGTGGCCCAAAGTTTGGTCTCGTCGGCCGGATTCCGAGTTGCAAACTACCGTGGCCTTCAGGAGTGCTTGGTACGATCTCGCATTTTTGGTGTTGGTGATTCACAGAAGCCTGAGGTCGATCACTCTGACGGTGTACGCAATTACCACTCGGGTTTTCAAAGTCCAAAATCAAATTGCTTCCCCAAGAATTTTGCTTCTTGCTATTCGACCATTGCCAGTGAGGTTCTCGGTGATAATTGTAGGAATCCTATTATGTTGGGATTGATCACGGTGATGAAGTCTACTGTTATTTCATGTTCGTCTGGTACAGCAATGGGAATTTTTGGGATTTCTCCATTCAAAGCGACTTCAATCATACCCTTTTTACAGGGTTCAAGGTGGCTTCCTTGCAATGAGTCTGTACTGGGCTCTGCTATCGGTGAAGTGTCTAAAGGTAGAACTTTGCATATCAGTGGCGGAGAGAGTGAAAGCTCAGATTGCTCACGAAAAGATTTTGTAAAAAGCAGCTGGATGTCCCGATTTTTAAATTTTTGTTCGGAGGATACAAAGGCCATGTTGACTGCCTTTACTGTTAATTTGCTCTTCCGTTCATTCTTGGCTGAACCCAGATCGATACCTTCGTCTTCCATGTATCCTACTCTTGATGTGGGTGACCGCATATTAGCGGAGAAGGTTTCCTTTTTTTTCAGAAAGCCTGATGTCTCGGACATTGTCATCTTCAAAGCACCTCCTATTTTACAGGAAATTGGTTATAGTTCAACTGATGTATTTATCAAAAGGATAGTAGCAAAGGCAGGAGACTGTGTAGAAGTCCGTAATGGGAAGCTATTGGTAAACGGAGTGAATCAAGATGAAGAATTTGTTTTGGAGCCACTTGCCTATGAGATGGAACCCATGATTGTTCCTCAAGGTTATGTCTTTGTGATGGGAGACAATCGAAACAACAGCTTTGATTCTCACAACTGGGGCCCTCTTCCTGTAAAAAACATCATTGGAAGATCTGTTTTTCGATACTGGCCTCCTTCAAAAGTATCTGCCACTCTACTGCATGAAACGTCTGCTGGAACTAATCCCTTGGCGGTTTCCTGA 1125 0.4382 MAIRVTFSYSGYVAQSLVSSAGFRVANYRGLQECLVRSRIFGVGDSQKPEVDHSDGVRNYHSGFQSPKSNCFPKNFASCYSTIASEVLGDNCRNPIMLGLITVMKSTVISCSSGTAMGIFGISPFKATSIIPFLQGSRWLPCNESVLGSAIGEVSKGRTLHISGGESESSDCSRKDFVKSSWMSRFLNFCSEDTKAMLTAFTVNLLFRSFLAEPRSIPSSSMYPTLDVGDRILAEKVSFFFRKPDVSDIVIFKAPPILQEIGYSSTDVFIKRIVAKAGDCVEVRNGKLLVNGVNQDEEFVLEPLAYEMEPMIVPQGYVFVMGDNRNNSFDSHNWGPLPVKNIIGRSVFRYWPPSKVSATLLHETSAGTNPLAVS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01639 374 Pfam Signal peptidase, peptidase S26 194 351 IPR019533 GO:0004252|GO:0006465
Pte17g01639 374 NCBIfam signal peptidase I 196 352 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g01639 374 Gene3D Umud Fragment, subunit A 207 365 - -
Pte17g01639 374 SUPERFAMILY LexA/Signal peptidase 208 357 IPR036286 -
Pte17g01639 374 CDD S26_SPase_I 213 345 IPR019533 GO:0004252|GO:0006465
Pte17g01639 374 PANTHER SIGNAL PEPTIDASE I 154 357 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g01639 374 FunFam Peptidase/ serine-type peptidase 219 350 - -
Pte17g01639 374 ProSitePatterns Signal peptidases I signature 3. 318 331 IPR019758 GO:0004252|GO:0016020
Pte17g01639 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 269 281 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g01639 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 313 332 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g01639 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 210 226 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g01639 374 ProSitePatterns Signal peptidases I serine active site. 219 226 IPR019756 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01639 Pte-Chr17 30325730 30328466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01639 222 352 MADS-box Gene Family AT1G29960 33.333 8.50e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01639 K03100 - qsa:O6P43_018882 500.36