Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01635 ATGGAAGCGACAACAAAAAGATGCACTTCTTCGTCTTCGACATCTTCATCAGACTCTTGTTCTTCAGAGTCTTCCATAAGGAACACCACCAAACTAGAGAAAATTAAAGGTCCTTGGAGCGCCGAAGAAGACCGGATCCTCAGCCGGCTTGTAGATAAGTACGGTCCCAGAAATTGGTCGTTGATAAGCCGTTATATAAAAGGTCGCTCAGGTAAGTCGTGTAGGCTTAGGTGGTGTAACCAGCTAAGCCCAAGCGTGGAGCACAGGCCATTCTCGCCTGAAGAGGACGAGACCATCTTAGCAGCTCATGCGCAATACGGTAACAAGTGGGCAACCATCGCCCGGTTACTACCGGGTCGGACAGACAATGCCGTTAAGAACCACTGGAACTCAACACTGAAGCGTAGGGTAAGAGAGCAACGACAAACGGTCATTGAGCAGGGAGGGGGCGTTCAAGTTAGCTTGGGTAACAGAAGTTGTGGCAGTAGTAGTAATAAAGGGGTGGATGTTTCAGGATTAGAGGATGACCCATTGACTGCGTTGACTTTAGCACCACCAGGGAGGGGCGGTGGCAACGGTGCTTATGGCGAGAATTTGAACCATGACCATCATGAAAATTTACCAGCAGGTTTTTGGGATGCAATGAGGGATGTAATTGCGAGGGAAGTGAGAGAATATGTATCATCGAGCATGTCCCAAAGTTCCAGTTTTCATTGA 717 0.484 MEATTKRCTSSSSTSSSDSCSSESSIRNTTKLEKIKGPWSAEEDRILSRLVDKYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSPEEDETILAAHAQYGNKWATIARLLPGRTDNAVKNHWNSTLKRRVREQRQTVIEQGGGVQVSLGNRSCGSSSNKGVDVSGLEDDPLTALTLAPPGRGGGNGAYGENLNHDHHENLPAGFWDAMRDVIAREVREYVSSSMSQSSSFH* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01635 238 FunFam Transcription factor MYB44 90 136 - -
Pte17g01635 238 Gene3D - 89 148 - -
Pte17g01635 238 CDD SANT 90 133 IPR001005 -
Pte17g01635 238 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Pte17g01635 238 MobiDBLite consensus disorder prediction 1 27 - -
Pte17g01635 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 137 IPR017930 -
Pte17g01635 238 SMART sant 87 135 IPR001005 -
Pte17g01635 238 SMART sant 35 84 IPR001005 -
Pte17g01635 238 FunFam MYB transcription factor 36 87 - -
Pte17g01635 238 CDD SANT 38 80 IPR001005 -
Pte17g01635 238 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Pte17g01635 238 Pfam Myb-like DNA-binding domain 39 97 - -
Pte17g01635 238 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Pte17g01635 238 Gene3D - 35 87 - -
Pte17g01635 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Pte17g01635 238 PANTHER MYB PROTEIN-RELATED 36 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01635 Pte-Chr17 30300036 30302077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01635 33 136 MYB Transcription Factor Family AT3G50060 80.769 7.25e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g01635 Myb_DNA-bind_6 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01635 - - twl:120008459 280.026