Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01632 ATGCAGACAAACGGTTCTGATTCACAACCGCCTGAGCTGAATCAACGTCAGAAACAGCAGACTCCCACTCAGACTCAACCACCACCGCCCCCTCATCTGCCTCTACCGCAGCCCTGGATGTCGATGCAGTACCCTGCGGCCGCCGTGATAATGCAGCATCAGATGTTACCACCTCAGCATTACGTTCCTCCACCACCACCTTACATGCCTTACCACCACTACCATCCTCATCAACATCAAGGATCCAGCAGTGGTGAGAACAAGACGATCTGGGTCGGGGATTTGCATCATTGGATGGACGAGAACTACCTCCACAGCTGCTTTGCTTCTACGGGAGAGATTGCTTCCATCAAGGTTATTCGAAATAAGCAGACTGGTTTGTCCGAGGGATATGGATTTGTCGAGTTCTTCTCACATGGAATAGCTGAGAAAGTATTACAAAACTACGCAGGAATTTTGATGCCAAACACAGACCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACGGGTGACAAGCGATCAGACAATGTTCCCGATCTCTCTATTTTTGTTGGGGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCCAGTAAATATCCATCTATTAAAGCTGCGAAAGTTGTTTTTGATGCCACAACCGGCCGTTCAAAGGGTTATGGTTTTGTGAGGTTTGGAGATGATAATGATAGGACGCAGGCTATGACTGAAATGAATGGCGTTTACTGTTCAAGCAGGCCTATGCGCATTGGTGCTGCAACTCCAAGGAAGTCATCAGGCTATCAACAGCAGGGATACCCTTCAAATGGAACGCCTAGCCAAGGATTTCAATATGATGCTGACTCAAACAATACAACGATTTTTGTCGGTGGACTTGATCCCAATGTTACTGATGAAGATCTCAGGCAACCATTCTCACAGTACGGTGAGATAGTTTCTGTTAAGATACCAGCAGGTAAAAATTGTGGCTTTGTTCAATTTGCAAACAGAAATAATGCTGAGGAGGCAAAGGAGAAATTAAATGGAACGGTCATTGGCAAGCAATCAGTTCGTCTTTCGTGGGGCCGCAATCCAGCGAATAAGCAATTTAGAGTTGATTTTGGCAATCATTGGAGTGGGGCATACTACGGAGGTAAGCTTTATGATGGTTATGGATATGCCTGGCCACCCCTTCATGATCCAAGCCTATATGCCGCAGCATCCCCTGCATATGGGGCTTATCCAGTGTACAGCAGCCACCAACAGCAAGTAAGCTGA 1272 0.4654 MQTNGSDSQPPELNQRQKQQTPTQTQPPPPPHLPLPQPWMSMQYPAAAVIMQHQMLPPQHYVPPPPPYMPYHHYHPHQHQGSSSGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFSHGIAEKVLQNYAGILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASKYPSIKAAKVVFDATTGRSKGYGFVRFGDDNDRTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQGYPSNGTPSQGFQYDADSNNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPAGKNCGFVQFANRNNAEEAKEKLNGTVIGKQSVRLSWGRNPANKQFRVDFGNHWSGAYYGGKLYDGYGYAWPPLHDPSLYAAASPAYGAYPVYSSHQQQVS* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01632 423 MobiDBLite consensus disorder prediction 23 38 - -
Pte17g01632 423 FunFam Polyadenylate-binding protein RBP47B 169 271 - -
Pte17g01632 423 CDD RRM3_NGR1_NAM8_like 289 360 - -
Pte17g01632 423 MobiDBLite consensus disorder prediction 261 279 - -
Pte17g01632 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Pte17g01632 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 354 IPR000504 GO:0003723
Pte17g01632 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 156 IPR000504 GO:0003723
Pte17g01632 423 MobiDBLite consensus disorder prediction 1 22 - -
Pte17g01632 423 Gene3D - 87 167 IPR012677 -
Pte17g01632 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 79 366 - -
Pte17g01632 423 FunFam Polyadenylate-binding protein RBP47 272 392 - -
Pte17g01632 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Pte17g01632 423 FunFam Polyadenylate-binding protein RBP47B 87 167 - -
Pte17g01632 423 SUPERFAMILY RNA-binding domain, RBD 168 279 IPR035979 GO:0003676
Pte17g01632 423 CDD RRM2_SECp43_like 180 259 - -
Pte17g01632 423 MobiDBLite consensus disorder prediction 259 279 - -
Pte17g01632 423 SUPERFAMILY RNA-binding domain, RBD 49 169 IPR035979 GO:0003676
Pte17g01632 423 CDD RRM1_SECp43_like 89 169 - -
Pte17g01632 423 Gene3D - 274 368 IPR012677 -
Pte17g01632 423 SMART rrm1_1 182 256 IPR000504 GO:0003723
Pte17g01632 423 SMART rrm1_1 89 164 IPR000504 GO:0003723
Pte17g01632 423 SMART rrm1_1 291 358 IPR000504 GO:0003723
Pte17g01632 423 Gene3D - 169 273 IPR012677 -
Pte17g01632 423 MobiDBLite consensus disorder prediction 1 38 - -
Pte17g01632 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Pte17g01632 423 SUPERFAMILY RNA-binding domain, RBD 284 390 IPR035979 GO:0003676
Pte17g01632 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01632 Pte-Chr17 30284322 30287976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01632 60 370 Eukaryotic Initiation Factors Gene Family AT4G34110 27.586 5.96e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01632 - - cit:102622145 654.44