Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01623 ATGGAGACTCGTGCAGGGAAGAGAAGGTCTGAAGCTGTTCGCTTGGCTGAGAACCAATCGCCCAAGAGGAAGCGAGTTGTGTTGGGGGAAATTTCCAATTTGGCAAATATTAGAGATCCTTTGAGACCAGGTCCTGCATTGGAGTCCAAGAATCAGAAGTGTAAAACCAAGGCCAAGAAGGCGTTGTCAACAACTACCACCAGCGCCTGTACAACCGCCGATAGTGAGGATAAAACCCATACCCAAGATGAAACAATGGAACATCCCCAATTATCTGTCCCTTATGCTTCTGATATTTATTCGTACCTTAGGCAAATGGAGGAAGCACCGACGTCGAGACCATTCCCTGACTATCTTGAGAAAACCCAAACAGATCTAAATGCCAACATGAGAGGAATACTGGTAGACTGGCTGGTCGAGGTTGCAGAGGAATACAAACTTCTTGCAGATACGCTTCATCTCGCAGTCTCCTTCATTGACAGGTTCCTATCTGTTCATGCTGTAAGCAGGCATAGGCTTCAATTGCTTGGTGTTTCATCCATGCTAATTGCCTCAAAGTACGAAGAAATCAGTCCTCCACACGTTGAAGCGTTCTGTTATATAACCGATAATACATATACCAAGGAAGAGGTGGTGAAAATGGAGGCCGATGTACTTAAATCGTTGAAATTTGAAATCGGCAATCCTACAGTGAAGTCCTTTCTTAGAAGATTTGCTGTGGTTGCTTCTGAAAATCACAAAAGTCCAAATTTGCAGCTTGAGTTCCTTGGTTGCTATATCGCAGAGCTAAGCTTGTTGGACTACAGCTGCGTGAAACTCTTGCCATCTTTATTGGCAGCCTCGGTGATCTTCCTTGCAAGATTTATCGTCTGGCCTAAGAAACAACCTTGGAATCCAACATTGCAAAGATTCTCCGGATATAAACCCTCGGAGCTGAAGGAATGCGTGCTTATCTTACATGATCTTTATTTGGGACGGAGAGGAGGATCTTTGCAGGCGATAAGAGAAAAATACAAGCAGCATAAGCAGTTTTACCCTCTTCTCCGGAGGTACCGCTTTCTTACTTCCAAGATCAATGAGCAGAGGTGTAAAATCCGACAAGCTGCTCTTATAAATGGAGGGCACTATGGGATTAGATGGAATTACAAATCTGATTTGGGACTGTGA 1167 0.4422 METRAGKRRSEAVRLAENQSPKRKRVVLGEISNLANIRDPLRPGPALESKNQKCKTKAKKALSTTTTSACTTADSEDKTHTQDETMEHPQLSVPYASDIYSYLRQMEEAPTSRPFPDYLEKTQTDLNANMRGILVDWLVEVAEEYKLLADTLHLAVSFIDRFLSVHAVSRHRLQLLGVSSMLIASKYEEISPPHVEAFCYITDNTYTKEEVVKMEADVLKSLKFEIGNPTVKSFLRRFAVVASENHKSPNLQLEFLGCYIAELSLLDYSCVKLLPSLLAASVIFLARFIVWPKKQPWNPTLQRFSGYKPSELKECVLILHDLYLGRRGGSLQAIREKYKQHKQFYPLLRRYRFLTSKINEQRCKIRQAALINGGHYGIRWNYKSDLGL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01623 388 SMART Cyclin_C_2 229 347 IPR004367 -
Pte17g01623 388 Gene3D - 114 227 - -
Pte17g01623 388 MobiDBLite consensus disorder prediction 1 22 - -
Pte17g01623 388 Gene3D - 98 342 - -
Pte17g01623 388 SUPERFAMILY Cyclin-like 87 226 IPR036915 -
Pte17g01623 388 MobiDBLite consensus disorder prediction 58 75 - -
Pte17g01623 388 SUPERFAMILY Cyclin-like 229 344 IPR036915 -
Pte17g01623 388 Pfam Cyclin, N-terminal domain 98 226 IPR006671 -
Pte17g01623 388 SMART cyclin_7 136 220 IPR013763 -
Pte17g01623 388 SMART cyclin_7 233 321 IPR013763 -
Pte17g01623 388 MobiDBLite consensus disorder prediction 58 86 - -
Pte17g01623 388 FunFam Cyclin A1 216 345 - -
Pte17g01623 388 ProSitePatterns Cyclins signature. 131 162 IPR006671 -
Pte17g01623 388 PANTHER CYCLINS 75 340 IPR039361 -
Pte17g01623 388 FunFam Mitotic cyclin 6 114 214 - -
Pte17g01623 388 CDD CYCLIN_AtCycA-like_rpt2 229 342 - -
Pte17g01623 388 Pfam Cyclin, C-terminal domain 229 342 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01623 Pte-Chr17 30230862 30232970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01623 1 342 Core Cell Cycle Gene Families AT1G47230 55.202 3.65e-133 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01623 K06627 - qsa:O6P43_015182 431.795