Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01621 ATGAAAGGGCCATGGAGTCCCGAAGAAGACGAGGCCTTACGAAGATTGGTACAAACATATGGGGCGAGAAATTGGTCCGTCATCGGCAAATCGATTCCTGGTCGATCAGGAAAGTCCTGTCGTTTGCGTTGGTGCAACCAGCTATCCCCAGAAGTTGAACGCAGGCCATTCACCCCTGATGAGGACGAGACCATCATCAGGGCACACGCTAGGTTCGGAAACAAATGGGCCACCATCGCCAGACTCCTCCCCGGTCGAACCGACAACTCTATCAAGAATCACTGGAACTCCACGCTGAAGAGGAAGTGTTCATTCGACACATATGGCCAGCAGCCCCTAAAAAGATCAGCCAGTGCCGATGCTGGCACCCATATCTCGGGTTTTTGTTTGAACCCGAGCAGCCCAACTGGATCCAATTTGAGCGACGCTGGTTTGCCCGATTCGCCCCACACGCAGTTTTTCAGACCATTAGCTAGAACAGTAACCCTTGTTTCCACGACCCCACAAGTTGACACCTTCCATTCGGTCTCTGCTCCACCGACATCTCTGAGTCTCTCACTTCCTGGATCGGATCCATTCGAGGATGGTTCCCATCAGGGTTCGACCCATACCCCCATGGTCCAAGTGGAACCTCAACCGCCGCCGTTTGCAATACCTGTGACTCAAACACTGGTGGGTGGAGCAGCGCAGCAAGTGGTTTATCCGTGCAATAGTGATATCAGCAGCAATCTGAAACAAGAGGATCAGCAGTTCTTTAGTGCGGAGTTCTTATCTGTGTTACAAGAAATGGTAAGGAAGGAAGTAAGGAGTTACATGTCTGAAGTCGAGCAGAAAGGACTGTTTCTGCATACAGAGGCTCTTAGGAACGCCGTGGTGAAGCGTATTGGTATTAGCAGGCTTGAGTAG 906 0.5132 MKGPWSPEEDEALRRLVQTYGARNWSVIGKSIPGRSGKSCRLRWCNQLSPEVERRPFTPDEDETIIRAHARFGNKWATIARLLPGRTDNSIKNHWNSTLKRKCSFDTYGQQPLKRSASADAGTHISGFCLNPSSPTGSNLSDAGLPDSPHTQFFRPLARTVTLVSTTPQVDTFHSVSAPPTSLSLSLPGSDPFEDGSHQGSTHTPMVQVEPQPPPFAIPVTQTLVGGAAQQVVYPCNSDISSNLKQEDQQFFSAEFLSVLQEMVRKEVRSYMSEVEQKGLFLHTEALRNAVVKRIGISRLE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01621 301 FunFam Transcription factor MYB44 56 102 - -
Pte17g01621 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 103 IPR017930 -
Pte17g01621 301 MobiDBLite consensus disorder prediction 175 204 - -
Pte17g01621 301 SUPERFAMILY Homeodomain-like 2 95 IPR009057 -
Pte17g01621 301 Gene3D - 1 53 - -
Pte17g01621 301 CDD SANT 56 99 IPR001005 -
Pte17g01621 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Pte17g01621 301 Pfam Myb-like DNA-binding domain 5 63 - -
Pte17g01621 301 SMART sant 53 101 IPR001005 -
Pte17g01621 301 SMART sant 1 50 IPR001005 -
Pte17g01621 301 FunFam MYB transcription factor 2 53 - -
Pte17g01621 301 Gene3D - 55 122 - -
Pte17g01621 301 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Pte17g01621 301 PANTHER MYB PROTEIN-RELATED 2 194 - -
Pte17g01621 301 CDD SANT 4 46 IPR001005 -
Pte17g01621 301 ProSiteProfiles Myb-like domain profile. 1 48 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01621 Pte-Chr17 30209704 30210609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01621 1 302 MYB Transcription Factor Family AT5G67300 47.799 8.42e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g01621 Myb_DNA-bind_6 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01621 K09422 - qsa:O6P43_016026 352.443