Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01612 ATGGCGCAAATTCAAGTTCAGAGTCCGGTTTTAGCTCCAAATGGTGTCCCAGCACCTCCAGCAACAACGGAATCGGGTGGAAATACGTTCACTTTGACGTCATTGTATGTGGGGGATCTGGACCCCAATGTGAATGATGCGCATCTCTACGACCTATTCAATCAGATCGGCACGGTTATGTCAGTTAGGGTTTGTAGGGACTTGGCTACTCGTCGTTCTCTTGGTTATGGCTATGTCAATTACAGCAATCCTCAAGATGCTTCGAGGGCTTTGGAGTTGCTGAATTTTACTCCACTGCTTAACAAATCCATCAGAATCATGTATTCTCACAGGGATCCTAGCATGCGCAAGAGTGGTACCGCAAATATATTTGTGAAGAATCTGGACAAGGGTATTGATCACAAAGCATTGCACGATACCTTTTCTGCTTTTGGGAATATTCTCTCTTGTAAGATAGCTACTGATGAATTTGGCCAATCCAAAGGCTATGGTTTTGTTCAATTTGATAATGAAGGATCAGCTCAAAATGCTATTGACAAATTAAACGGTATGCTGTTGAACGAGAAACAAGTTTATGTTGGACACTTCCTACGTAAGCAAGACAGAGAGGCTGTTTCGACTAAGACAGAAAAGTTTAACAATGTCTACGTGAAAAATTTATCCGAGTCAGCAACTGATGATGAACTGAAGAAAACTTTTGGAGAATATGGCACTATTACCAGTGCTGTAGTGATGAGAGATGTAGATGGTAAATCCAAGTGTTTTGGTTTTGTCAATTTCGAAAATGCAGATGCTGCTGCTAAGGCTGTTGAGGCTCTCAATGGGAAAAAGTTTGACAACAACGAGTGGTATGTTGGAAGAGCTCAGAAGAAGTCTGAAAGGGACTTTGAACTTAAAGGGCGTTTTGAGCAGAGTAAGAAGGAAGCAGCTAACAAGTTTCTAGGCTTGAATCTGTACATCAAGAACTTGGATGATACCGTCAATGATGACAAACTTAAGGAACTATTTACTGAGTTCGGCACTGTTACTTCATGCAAGGTGATGAGGGACCCTAATGGAACTAGTAGAGGTTCGGGATTTGTTGCATTTTCAACTCCTGAAGAAGCCTCTCGAGCTATTACAGAGATGAATGGGAAGATCGTTGTCAACAAACCTCTCTACGTGGCTCTTGCACAACGAAAAGAGGATAGAAGAGCTAGATTGCAGTCTCATTTTTCACAAATGAGGCCTATGCAAATGGTCCCTCCAGTCATTCCACGTATGGCAATGTATCCTCCTGGTGCTCCAAGTCTGGGACAGCATTTTCTATACGGTCAGGCACCTCCAACTGTGATTCCTCCCCAAGCTGGATTTGGTTACCAGCAACAACTTGTAGCGGGGATAAGGCCCGGTGGTGTTCCAGTGCCCAACTTTTATGTGCCCATGGTTCAGCAGGGTCAGCAAGGCCAGCGCACTGGAGGACGCCGTGGAGCAGGTCCTTTGCTACAATCTCATCGAGCTGTTGGCCAGCAGATGATACCTAGAGGACATTTTCACAGGCATGGAGGAGGTCGCAGTGCAGCTGCTGGGGTGATACCTGTTGCACATGACACAGGAGCTTATCCTATAACTCCTGATACAACCGTGGGACCATCTTTGAAGGCATTGGTTTCAGCCCTTGCAAACTCCACCCCTGAAGAGCAGAGAACTTTGCTGGGAGAATCTTTATTTCCTTTGGTTGCTTGCTTGGAGCCTGATTCTGCTAGCAAGGTCACTGGAATGCTTCTGGAGATGGACAAGAATGAAGTGTTGCACCTGATTGAGTCACCTGATGCATTGCAGGCTAAAGTCGCAGAAGCAATGGAAGTTCTGAGAAATGTTGCTCAGCAACCTATTAACAGCCCCACTGATCAACTTGCGTCCCTTTCTCTTAACGACAATCTTGTCTCTTAA 1932 0.4493 MAQIQVQSPVLAPNGVPAPPATTESGGNTFTLTSLYVGDLDPNVNDAHLYDLFNQIGTVMSVRVCRDLATRRSLGYGYVNYSNPQDASRALELLNFTPLLNKSIRIMYSHRDPSMRKSGTANIFVKNLDKGIDHKALHDTFSAFGNILSCKIATDEFGQSKGYGFVQFDNEGSAQNAIDKLNGMLLNEKQVYVGHFLRKQDREAVSTKTEKFNNVYVKNLSESATDDELKKTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDNNEWYVGRAQKKSERDFELKGRFEQSKKEAANKFLGLNLYIKNLDDTVNDDKLKELFTEFGTVTSCKVMRDPNGTSRGSGFVAFSTPEEASRAITEMNGKIVVNKPLYVALAQRKEDRRARLQSHFSQMRPMQMVPPVIPRMAMYPPGAPSLGQHFLYGQAPPTVIPPQAGFGYQQQLVAGIRPGGVPVPNFYVPMVQQGQQGQRTGGRRGAGPLLQSHRAVGQQMIPRGHFHRHGGGRSAAAGVIPVAHDTGAYPITPDTTVGPSLKALVSALANSTPEEQRTLLGESLFPLVACLEPDSASKVTGMLLEMDKNEVLHLIESPDALQAKVAEAMEVLRNVAQQPINSPTDQLASLSLNDNLVS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01612 643 Gene3D - 202 301 IPR012677 -
Pte17g01612 643 Gene3D - 302 406 IPR012677 -
Pte17g01612 643 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 618 IPR006515 GO:0003723
Pte17g01612 643 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 622 IPR002004 GO:0003723
Pte17g01612 643 FunFam Polyadenylate-binding protein 14 115 - -
Pte17g01612 643 CDD RRM1_I_PABPs 34 113 IPR034364 -
Pte17g01612 643 SMART poly_2 557 620 IPR002004 GO:0003723
Pte17g01612 643 Gene3D - 542 623 - -
Pte17g01612 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Pte17g01612 643 SUPERFAMILY RNA-binding domain, RBD 207 303 IPR035979 GO:0003676
Pte17g01612 643 CDD RRM3_I_PABPs 212 291 - -
Pte17g01612 643 SMART rrm2_1 214 292 IPR003954 GO:0003676
Pte17g01612 643 SMART rrm2_1 317 389 IPR003954 GO:0003676
Pte17g01612 643 SMART rrm2_1 122 194 IPR003954 GO:0003676
Pte17g01612 643 Pfam Poly-adenylate binding protein, unique domain 553 617 IPR002004 GO:0003723
Pte17g01612 643 Gene3D - 115 201 IPR012677 -
Pte17g01612 643 CDD RRM2_I_PABPs 119 195 IPR045305 -
Pte17g01612 643 FunFam Polyadenylate-binding protein 542 623 - -
Pte17g01612 643 SUPERFAMILY RNA-binding domain, RBD 317 409 IPR035979 GO:0003676
Pte17g01612 643 SUPERFAMILY PABC (PABP) domain 470 635 IPR036053 GO:0003723
Pte17g01612 643 Gene3D - 15 114 IPR012677 -
Pte17g01612 643 PANTHER RNA BINDING PROTEIN 30 95 - -
Pte17g01612 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 290 IPR000504 GO:0003723
Pte17g01612 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Pte17g01612 643 FunFam Polyadenylate-binding protein 299 404 - -
Pte17g01612 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Pte17g01612 643 SUPERFAMILY RNA-binding domain, RBD 33 201 IPR035979 GO:0003676
Pte17g01612 643 SMART rrm1_1 214 286 IPR000504 GO:0003723
Pte17g01612 643 SMART rrm1_1 34 107 IPR000504 GO:0003723
Pte17g01612 643 SMART rrm1_1 317 389 IPR000504 GO:0003723
Pte17g01612 643 SMART rrm1_1 122 194 IPR000504 GO:0003723
Pte17g01612 643 FunFam Polyadenylate-binding protein 116 202 - -
Pte17g01612 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 386 IPR000504 GO:0003723
Pte17g01612 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Pte17g01612 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 104 IPR000504 GO:0003723
Pte17g01612 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Pte17g01612 643 MobiDBLite consensus disorder prediction 1 25 - -
Pte17g01612 643 FunFam Polyadenylate-binding protein 203 298 - -
Pte17g01612 643 CDD RRM4_I_PABPs 315 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01612 Pte-Chr17 30135108 30139076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01612 1 638 Eukaryotic Initiation Factors Gene Family AT4G34110 63.231 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01612 K13126 - zju:107419988 912.524