Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01609 ATGCAAGGGCAGAGGGGGGCAATTGATTCCATATCAGAGACTTTGGAGTTCGATCATGGCTCCACTTCGACCAGTTCTACTGTAGATCATCAAATTTGCTGGAACAATATGGGTGGTCCAGCAGCTTCCACTAATGCTGCTATTGATCCTCAAATTTTGTGGAACAATGCACCAAGTCCTGCAGGAAACCAACTACCCAATTATGTAATTTTGCCCAATAATCTTGAAACATCCTATGGGAGTTCTATCCATCAATGGCCAAGTTTGGGTGGGTGGAGCTTTGGTGAATCTAGTTCTAGTGATTCACAGAGCGAGGTTAATCACAATGAGCAAAAAGCAGGACTTGGATGGTCATCTTCAGTGAGAGCAAGTGCAGGATCCCATCCAAGGTTGCAGGAAAGGCTCTATGAACGAAGCGATCATCTGTCTCTGGATAGTATCCATAGAAGCCCTATGTTGATCCATAACTCAAGTGCTGATGGAGTTCCCCAAAATCTTAACTTGAATGCAGGTTTTGTGGTAGATGATGGTGTCACTGATCAAGGTTTGGAACATCCTCACATGCACAAATCTGGTGGATTGCTTAATGAGCAGAGTTTAAGCAACACAAGTTCAGGTTCTTTTATACTTTCTTCTGGCAGTAATGGATTCTTGGGAGAAGATAATGACATTAGATCAGGTCGAGCATTGGAAGCTCGCCGTCTGTCTTGTAAAAGAAAGGCTGTTGAAGGTATTGCTGGCCAATCTTCTGAAGGAGGAAGTTCTGGGCGAAGTCAGCACGCTGAAAATGGTGCTGGACTTGGTGTTCCTGCTGAAGGTAGAGATGTAAGCAATAGTACTGTATCTACTCCACAAGAACAGATTCGCAACGTTTTGGGTCTTATGCGAAGGGGTGAGAACCTGCGATTAGAGGATGTCATGATCCTTGACCACTCAGTTTTTTCGGGGATGGCTGATCTCCATGATCGGCATAGGGACATGCGGCTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTTTGGAGGAGCGAATTGGAAATGTGAGCACTGGATTGAGCGAGGAAACCATATCAAATCGTCTGAAACAGAAAAAGCATTCCGTTGTAGGAGAATCTCAAACCGAGGCTGAACCCTGCTGTATTTGTCAGGAGGAATACAATGAGGGAGAAGATATTGGCACACTTGACTGCGGGCATTATTTTCACAGCAACTGTATTAAACAGTGGTTAATGCACAAGAATCTCTGCCCCATCTGCAAGACAGCAGGATTGGCTACATGA 1284 0.4455 MQGQRGAIDSISETLEFDHGSTSTSSTVDHQICWNNMGGPAASTNAAIDPQILWNNAPSPAGNQLPNYVILPNNLETSYGSSIHQWPSLGGWSFGESSSSDSQSEVNHNEQKAGLGWSSSVRASAGSHPRLQERLYERSDHLSLDSIHRSPMLIHNSSADGVPQNLNLNAGFVVDDGVTDQGLEHPHMHKSGGLLNEQSLSNTSSGSFILSSGSNGFLGEDNDIRSGRALEARRLSCKRKAVEGIAGQSSEGGSSGRSQHAENGAGLGVPAEGRDVSNSTVSTPQEQIRNVLGLMRRGENLRLEDVMILDHSVFSGMADLHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETISNRLKQKKHSVVGESQTEAEPCCICQEEYNEGEDIGTLDCGHYFHSNCIKQWLMHKNLCPICKTAGLAT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01609 427 MobiDBLite consensus disorder prediction 94 123 - -
Pte17g01609 427 MobiDBLite consensus disorder prediction 1 26 - -
Pte17g01609 427 FunFam E3 ubiquitin-protein ligase MBR2 348 425 - -
Pte17g01609 427 SUPERFAMILY RING/U-box 379 422 - -
Pte17g01609 427 Pfam Ring finger domain 380 421 IPR001841 -
Pte17g01609 427 MobiDBLite consensus disorder prediction 241 285 - -
Pte17g01609 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 424 IPR013083 -
Pte17g01609 427 ProSiteProfiles Zinc finger RING-type profile. 380 421 IPR001841 -
Pte17g01609 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 37 425 IPR045191 GO:0061630
Pte17g01609 427 SMART ring_2 380 420 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01609 Pte-Chr17 30121307 30125135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01609 287 427 C3H Transcription Factor Family AT2G15530 66.207 7.56e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01609 - - qsa:O6P43_016047 246.899