Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01577 ATGGAACCCATTGGCATTGGTGCTTTCCTTGATGGTGAATGGGATTGCTTTCACCAGATGCTTGCTGCCGAAGAGCTTGAATTCGCGCCTCAATTTCTCGACCTGAGTCAACTCTTGAATGGACAGGATGAAAAAGTCAACTTTGATATTGATCATTCTACGCTTGGCCCAGCGTTTGAAGCTAGCAAAAGCATGCCTGTGGCAATTGAAAATCTGTTTAACTCTTCAGATGCAATCAACTATGACAGAGTGGAGTGTATTTCGCAGCAAAGCAGCTTCCACGATAACACTTTCTTCGTCACCACAGCCCATCAAAGTAGCCCCTTAAGCACTCATTCTACTAAAATTGTATCAAGTGATCATAACAGCATGTACATGGATGCCCCCTCTGTGAAGGACATGTGTGCTTTCAGCTCATCACTCGTTGACATGATGATGCAAGACACTGCTCGATTGAATGAAGAGAGTAATGGAGATGCGGCGATGACCCCGGAAAATCAACAAGGTCCAGTTGCAATTCCCCAAAACCAGATGACCCTCAAAAGGAAGCTTGGGGTTCAAGAATTGCCGGGCTGTGCAGAGTATAAAAGCTACACTTGTTCTGTGAATCAGAAGAAGAAATCTCGAGTTTCAAGAGATGTGCGAAGGACTGAGAGGAACGCAGAGGCAAAGGAAAGCCAGAAAAAAATTCCTAATGCCAATAGGGAAAAAGAGATTGATGCTGTGTTATCAGGAGGACAGAGTTATAGTAGTTGCAGTACAGAAGAAGACAGTGCTTCGCTGGAAATGATTGGTCGGGTGACTTCGTCGTCTAATGCCTCTGCAGCTCTCCACTCCAATGGCAAGACTCGAGCCAGTAGGGGTTCAGCAACGGATCCCCAAAGCCTGTACGCCAGGAAAAGGAGAGAGAGAATAAATGAGCGACTAAAAATCCTACAGAATCTCGTCCCTAGTGGAACAAAGATCGATATCAGTACAATGCTCGAAGAGGCTCTGCATTACGTGAAATTTTTACAGCTCCAAATTAAGCTCCTGAGCTCGAATGACCTTTGGATGTACGCTCCTATTGCTTACAATGGAATCGATATGGGTCTCCCCCGCAACATGAAGATTTCTTCACCTTTGTGA 1128 0.4521 MEPIGIGAFLDGEWDCFHQMLAAEELEFAPQFLDLSQLLNGQDEKVNFDIDHSTLGPAFEASKSMPVAIENLFNSSDAINYDRVECISQQSSFHDNTFFVTTAHQSSPLSTHSTKIVSSDHNSMYMDAPSVKDMCAFSSSLVDMMMQDTARLNEESNGDAAMTPENQQGPVAIPQNQMTLKRKLGVQELPGCAEYKSYTCSVNQKKKSRVSRDVRRTERNAEAKESQKKIPNANREKEIDAVLSGGQSYSSCSTEEDSASLEMIGRVTSSSNASAALHSNGKTRASRGSATDPQSLYARKRRERINERLKILQNLVPSGTKIDISTMLEEALHYVKFLQLQIKLLSSNDLWMYAPIAYNGIDMGLPRNMKISSPL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01577 375 MobiDBLite consensus disorder prediction 207 236 - -
Pte17g01577 375 Gene3D - 291 347 IPR036638 GO:0046983
Pte17g01577 375 MobiDBLite consensus disorder prediction 272 295 - -
Pte17g01577 375 SMART finulus 295 344 IPR011598 GO:0046983
Pte17g01577 375 MobiDBLite consensus disorder prediction 207 237 - -
Pte17g01577 375 Coils Coil 207 227 - -
Pte17g01577 375 Pfam Helix-loop-helix DNA-binding domain 299 339 IPR011598 GO:0046983
Pte17g01577 375 MobiDBLite consensus disorder prediction 272 293 - -
Pte17g01577 375 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 120 348 IPR045843 GO:0003700|GO:0006355
Pte17g01577 375 FunFam Basic helix-loop-helix transcription factor 290 347 - -
Pte17g01577 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 353 IPR036638 GO:0046983
Pte17g01577 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Pte17g01577 375 CDD bHLH_AtIND_like 290 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01577 Pte-Chr17 29912873 29915246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01577 196 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 54.645 8.18e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g01577 HLH 8.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01577 - - qsa:O6P43_015996 313.923