Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01572 ATGGGATGGGTTTTCTGGTATGCCAATAAAGCTGGGAGACGAGAATTGCGTTACGTGTCACCAAGTGGCAAGGTCTATTATTCTCTAAGCACCGCCTGCAAAAGCTGTATCGACGATGGGTCTCTCTCAGAAAGTGTCGCCTCAAACTCAAGTTCTGTTTCCAAAAATGTTATAGATGTAGAAGGTGGTTCATGTAGTCCTGCAACATTGTCTATTATGACTACAGAAGAGGATGCCACGAGTCAGATCACAGGGACGAAGCGAAAAATTGGTTCTTCATTCAGGGATCGTACTCCAACTCAAGCTAAAGCTAAACCCTACGACATCGCGGATGCTATCAGTGTGGAAGTTGTTGGACTCGAAGGACTGAGCAACCCAGACCATCGCGAGGTCAAAGTCTCCAGGTTGAGCAAAGGCAAAGTTATTGCAGATATGAAGAGATTAAGTGATCTGAAGAGCTGTCCCAGACAACGAGCTGGGAAAGTAGTGAAGCAAGCGGGAAAGGAATCTGGCCCTACGAAGCGCAATCCTCGAACAGTTCTCTCTTTTCTGATTGAGAACAACATAGTGGCGCCAGAGACAAAGGTGCATTACGGTGAAAGAGGAAAAAAGGGTAGGCTTCGCCGTGAAGGGATCAAGTGTGATTGTTGCTCAAAGATCTACACTCTCTCTGGTTTTGAGGCTCATTCTCGTAGCACAAAACACAGGCCTGCTGCTAATATTTTCTTAGAAGATGGCAGGTCATTGATGGACTGCCAGTTACAAACATTGTATTGCAGTAAAGTTAAAAGCCTCGAAACTCTTGCTCACAGAAAAGGGGATAGCCAACAAGATGAAAATGATGACATTTGCTCTATTTGTTATAATGGGGGTGAGCTAATTCTTTGTGATGTTTGCCCTTCCTCATTCCACAGGGCTTGCCTGGGTCTGAATGAACTTCCTCTAGGGGATTGGTTTTGCCCATCATGCCTTTGCGGTATGTGCAAGCAAAGAAACTTCAGAAGAGATCATTCTACACGTGACGTCATTGCGGAGACCAATGACAATTTTCTCTGTTGTGACCAATGTGAGCGTAATTTTCACATTGGTTGTCTAAAGAGAAAAGGGCATCCACATCTGGAAAAGGATGATAATGATCTTAACAAGAATTGGTTCTGCAGCGTGAAATGCGAGAAAATTTTCCAGGGGCTGCATAGTTTGATTGGAAGAGCAATTCCGGTTGGTGCTGACAATCTGACCATGACACTGTTGAAATCTGCGGAATCTGATAAGCTTCAAACTGATGATTCTAAGTCTGCAGACCTTGAAGCCTCAATCCAAAATATTAGGAAGCTCCGTTTAGCTCTTGATGTCATGCACGAGTGTTTTGAACCTACCAAAAACCCTAATACTGGGGAAGACCTTGTTGAGAATGTGTTCTTCAACAAAAGATCTAAACTTCGTCGGTCGAACTTCAGTGGATTCTATGTTTTGGTGTTGCAGCACAATGACGAATTGGTAAGTGTAGCAAGCGTTAGAGTTTATGGGGAGAAGGTTGCAGAAATTCCTCTTGTGGCAACGAGGTTTCAGTTCCGCCGGCAAGGCATGTGCCGCATTTTGATGAATGGGCTAGAAAAATTGCTTGCTACTCTAGGAGTGGAGAGGATGATTTTGCCTGCCGTTCCTGGAGTGCTCCAAACTTGGACTGCCTCATTTGGCTTCAAAGTGATGATAGAGTCAGAGCGAACGCAGTTTCTTGAGTATACATTCTTGGATTTCCAGGGCACGATCTTGTGTCAGAAGCTAGTGTCACCTATTCTTTCGGGTAAATGTTCCAAATAA 1821 0.4437 MGWVFWYANKAGRRELRYVSPSGKVYYSLSTACKSCIDDGSLSESVASNSSSVSKNVIDVEGGSCSPATLSIMTTEEDATSQITGTKRKIGSSFRDRTPTQAKAKPYDIADAISVEVVGLEGLSNPDHREVKVSRLSKGKVIADMKRLSDLKSCPRQRAGKVVKQAGKESGPTKRNPRTVLSFLIENNIVAPETKVHYGERGKKGRLRREGIKCDCCSKIYTLSGFEAHSRSTKHRPAANIFLEDGRSLMDCQLQTLYCSKVKSLETLAHRKGDSQQDENDDICSICYNGGELILCDVCPSSFHRACLGLNELPLGDWFCPSCLCGMCKQRNFRRDHSTRDVIAETNDNFLCCDQCERNFHIGCLKRKGHPHLEKDDNDLNKNWFCSVKCEKIFQGLHSLIGRAIPVGADNLTMTLLKSAESDKLQTDDSKSADLEASIQNIRKLRLALDVMHECFEPTKNPNTGEDLVENVFFNKRSKLRRSNFSGFYVLVLQHNDELVSVASVRVYGEKVAEIPLVATRFQFRRQGMCRILMNGLEKLLATLGVERMILPAVPGVLQTWTASFGFKVMIESERTQFLEYTFLDFQGTILCQKLVSPILSGKCSK* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01572 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 393 IPR013083 -
Pte17g01572 606 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 433 585 IPR000182 GO:0016747
Pte17g01572 606 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 448 576 IPR016181 -
Pte17g01572 606 SUPERFAMILY FYVE/PHD zinc finger 272 330 IPR011011 -
Pte17g01572 606 Pfam PHD-finger 283 325 IPR019787 -
Pte17g01572 606 PANTHER PHD FINGER PROTEIN 12 2 596 IPR042163 GO:0003714|GO:0045892
Pte17g01572 606 SUPERFAMILY FYVE/PHD zinc finger 346 388 IPR011011 -
Pte17g01572 606 CDD NAT_SF 490 551 - -
Pte17g01572 606 SMART PHD_3 325 391 IPR001965 -
Pte17g01572 606 SMART PHD_3 283 324 IPR001965 -
Pte17g01572 606 ProSiteProfiles Zinc finger PHD-type profile. 281 326 IPR019787 -
Pte17g01572 606 Gene3D - 438 581 - -
Pte17g01572 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 327 IPR013083 -
Pte17g01572 606 Pfam Tify domain binding domain 205 254 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01572 Pte-Chr17 29878100 29879920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01572 1 544 PHD Transcription Factor Family AT5G58610 36.288 3.23e-107 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte17g01572 TDBD 4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01572 - - tcc:18590471 550.051