Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01565 ATGGCTTTTCAAGGAACAACACAGAAATGCATGGCCTGTGACAAGACCGTCTATCTGGTCGACAGGTTGACAGCAGATAACCGTGTCTACCACAAAGCCTGCTTCCGATGCCACCACTGCAAAGGAACCCTGAAACTAAGTAACTACAATTCATTTGAGGGCGTTTTGTACTGCAGACCACACTTCGACCAACTCTTCAAAAGGACCGGCAGCCTTGAGAAAAGTTTTGAAGGGACACCAAAAATTGTGAAACCACAAAAACCTGTCGACCTGGAGAAACCGGCGGTCGCCAAGGTCTCAAACAAGTTTGGTGGAACCAGGGAGAAGTGTGTTGGATGCAACAACACAGTTTATCCAACTGAGAAGGTTTCAGTGAATGGAACCCCTTACCACAAGAGTTGCTTCAAATGCACCCACGGAGGATGCGTGATCAGCCCTTCTAACTACATTGCACATGAGGGGAGATTGTACTGTAAACACCATCACAACCAGCTCATCAAGGAGAAAGGCAACTTGAGCCAGCTTGAGGGTGAAAATGGCAAGAGTACAGCTGATGAGAAAGTCCAAGTCAGACAAGTTGTCACAGAAACATGA 594 0.4697 MAFQGTTQKCMACDKTVYLVDRLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPQKPVDLEKPAVAKVSNKFGGTREKCVGCNNTVYPTEKVSVNGTPYHKSCFKCTHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQLEGENGKSTADEKVQVRQVVTET* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01565 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pte17g01565 197 PANTHER OS06G0237300 PROTEIN 6 89 - -
Pte17g01565 197 FunFam LIM domain and actin-binding 1 4 74 - -
Pte17g01565 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pte17g01565 197 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Pte17g01565 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 135 - -
Pte17g01565 197 Pfam LIM domain 10 64 IPR001781 -
Pte17g01565 197 Pfam LIM domain 110 164 IPR001781 -
Pte17g01565 197 Gene3D Cysteine Rich Protein 105 174 - -
Pte17g01565 197 Gene3D Cysteine Rich Protein 5 74 - -
Pte17g01565 197 CDD LIM2_SF3 110 170 - -
Pte17g01565 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pte17g01565 197 CDD LIM1_SF3 6 68 - -
Pte17g01565 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pte17g01565 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Pte17g01565 197 SMART lim_4 9 61 IPR001781 -
Pte17g01565 197 SMART lim_4 109 161 IPR001781 -
Pte17g01565 197 MobiDBLite consensus disorder prediction 174 197 - -
Pte17g01565 197 FunFam LIM domain and actin-binding 1 104 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01565 Pte-Chr17 29845985 29847572 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pte17g01565 LIM 6.6e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01565 K09377 - zju:107433684 372.859