Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01544 ATGGGGGAAAGCCATGAAAATCTGGATATGGGGTTTCAGCAGGGTAATGAGAGTATACTGAATTGTCACTCATCAGGGCTGAGTACAAATTCACAGGCCCAGCAGGTTGCAGGAATGGCAATGAGCTCTTTGACCATGGCTAGACCTTCAGATGGGCATGGACCTGATCCTTTTATTGGTTCATGGGATCCACTGGGTTCATTGAGTCAAACTCACAGTGAGTTTGCCAGTTCTTCCTATTCTGTTACTTTGGGAAATCAAGGAATCAATAATGCCTCTCACCTTGTTCAATATGGAACTTCTGACTCAAGTTTTGCTGAACTGGTCCCGAAAATTCCTGGTTTTGGGAGGGGGAACTTCTCAGAAATGGTTGGTTCTTTTGGTCTACCTGGGTGTAGTGAACTTGCAAACACTGGATATCGGAGTCAATATAACCCAAATAAGGAGTTAGGTTTTGAAAGTAGTTCGGTGCATAGAATGCAGTCTCAGGATCAACGGCTAGCTCGTAAAGAGGAAATCATAAGATCTGCATCATATGGAAATAAACGAAAAAGAGAACCAGAGCCAAATTCCTCATCCAGTCCAAACAAGAATACTGAGGGGGAACAACTGAAGGATACTGGGAAGAGCTCCAACAGGAAAGAACAGGAGGAGAAGTCCAGAATTGAGCAACAGTCAACCTCTGATTTGCGTGGTAAGCAAACTGCAAAGCAAGATAAAGATGATTCTCATAGTGGAGAAGCTCCAAAAGAAAATTTTGTTCATGTCAGAGCTCGAAGAGGTCAGGCAACAAATAGTCATAGTCTTGCAGAAAGGGTGAGAAGAGAGAAAATTAGTGAGCGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAACAAGATTACCGGAAAGGCAGTCATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACAGCAAGTTGAGTTCTTGTCAATGAAGCTTGCTACTGTGAATCCAGAAATGAATTTTGATATTGAGAGAATTTTTTCCAAAGATATTCTCCATTCTCGCATGGGAAACAGCGGTATTTTGGGACTAGGAACTGGAATGAATTATTCTCTTCCTTTCCCCCAACCAAGTTTCCCCGGAACTCATCCAAGCATTCCAAGCACAATTGCTCAGTTTCCTTTGCCTCCAACTATGACAGACCAAGACTTCCAAAGTATGTTGCAAATGGGATATGACTCCGCAGCAGCAATTGACAATTTAGGACCCAATGGACGGTTGAAATCTGAGTTATAA 1269 0.4263 MGESHENLDMGFQQGNESILNCHSSGLSTNSQAQQVAGMAMSSLTMARPSDGHGPDPFIGSWDPLGSLSQTHSEFASSSYSVTLGNQGINNASHLVQYGTSDSSFAELVPKIPGFGRGNFSEMVGSFGLPGCSELANTGYRSQYNPNKELGFESSSVHRMQSQDQRLARKEEIIRSASYGNKRKREPEPNSSSSPNKNTEGEQLKDTGKSSNRKEQEEKSRIEQQSTSDLRGKQTAKQDKDDSHSGEAPKENFVHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEMNFDIERIFSKDILHSRMGNSGILGLGTGMNYSLPFPQPSFPGTHPSIPSTIAQFPLPPTMTDQDFQSMLQMGYDSAAAIDNLGPNGRLKSEL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01544 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 312 IPR011598 GO:0046983
Pte17g01544 422 CDD bHLH_AtBPE_like 252 337 - -
Pte17g01544 422 MobiDBLite consensus disorder prediction 233 257 - -
Pte17g01544 422 MobiDBLite consensus disorder prediction 174 273 - -
Pte17g01544 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 331 IPR036638 GO:0046983
Pte17g01544 422 MobiDBLite consensus disorder prediction 174 190 - -
Pte17g01544 422 Pfam Helix-loop-helix DNA-binding domain 265 313 IPR011598 GO:0046983
Pte17g01544 422 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 153 373 IPR024097 GO:0006355
Pte17g01544 422 MobiDBLite consensus disorder prediction 202 226 - -
Pte17g01544 422 FunFam Basic helix-loop-helix transcription factor 259 331 - -
Pte17g01544 422 Gene3D - 259 332 IPR036638 GO:0046983
Pte17g01544 422 SMART finulus 268 318 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01544 Pte-Chr17 29699116 29702352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01544 2 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 39.815 2.68e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g01544 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01544 - - qsa:O6P43_015952 510.76