Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01541 ATGGAGTTCGATGCGTGCAAGTTATTCATCGGTGGAATTTCTCCGAATACGACAGAAGAAGACCTAAAATATCATTTTGATCAGTATGGGAAAGTTACCATGGCCACTGTTTTCAAAAATCGATACAATCAGTCCAGAGGATTTGGATTCGTCACTTTCTCTAATACTTGTGCAGTAGATGCAGTTCTTGCCCAAAAGCACATTATTTTGGGAAAAAAGGTTGATGTTAAAAGAGCAATACCAAGAAGTGAGTCTCATCAACTGAGCAGATATGCAGTTACGGGTGGAAATAGCAATGCCTATAATGGCCAAGGTTTTACGAGAAAAAAGATATTCGTGGGAGGCTTAGCCCATGATCTCTCCGTGGAAGAATTGAAGAGTTATTTTGAGCAGTTTGGAGGGATAACTGATGCAGTTGTGATGCACGATATCTTGAAACAACGGCCAAGGGGTTTTGGGTTTGTCACTTTTGAATCAGAAGAATCCGTAGATGGTGCCTTGCAAAATAATTTTCATATACTGAAAGGCAAATGTGTCGAGGTCAAGAGAGCTGTACAGAAAGATGTTATGGATTCTATCAACGGTGCTAAGGGTGGAAGAGAACTTCAACAGGATTATCCTTTTTTCAGTCCTGTATATGGTTGCCCTGTGCCTGTTCATAGGTGTGGCCCTTACGGACCTTTTCCCTATAGTTGCTGGTACCTCATGGGTGGATTAGGCGGGGTTAGTTGGTATGGACCAAATTGTATTCAAGTTCCATATGATGTTTCAGGGAACTGCATGCTATTTTGCAATTACCCTCTACCTCACTCTCAGGTTCTTCTAACTCATGGCCATATGGCACTTGAGGTAGGAGAACCTGAGAGTGAGGTGGAAGAACATGAGATCGAATCAGTCAGATAG 903 0.4208 MEFDACKLFIGGISPNTTEEDLKYHFDQYGKVTMATVFKNRYNQSRGFGFVTFSNTCAVDAVLAQKHIILGKKVDVKRAIPRSESHQLSRYAVTGGNSNAYNGQGFTRKKIFVGGLAHDLSVEELKSYFEQFGGITDAVVMHDILKQRPRGFGFVTFESEESVDGALQNNFHILKGKCVEVKRAVQKDVMDSINGAKGGRELQQDYPFFSPVYGCPVPVHRCGPYGPFPYSCWYLMGGLGGVSWYGPNCIQVPYDVSGNCMLFCNYPLPHSQVLLTHGHMALEVGEPESEVEEHEIESVR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01541 300 Gene3D - 4 86 IPR012677 -
Pte17g01541 300 SMART rrm1_1 7 77 IPR000504 GO:0003723
Pte17g01541 300 SMART rrm1_1 110 182 IPR000504 GO:0003723
Pte17g01541 300 Gene3D - 106 199 IPR012677 -
Pte17g01541 300 SUPERFAMILY RNA-binding domain, RBD 107 199 IPR035979 GO:0003676
Pte17g01541 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Pte17g01541 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Pte17g01541 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 81 IPR000504 GO:0003723
Pte17g01541 300 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Pte17g01541 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 186 IPR000504 GO:0003723
Pte17g01541 300 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 4 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01541 Pte-Chr17 29689050 29690187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01541 2 192 Eukaryotic Initiation Factors Gene Family AT4G34110 27.179 1.23e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01541 K14411 - jre:108983296 211.846