Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01540 ATGGATTTTTGGGGTGTGGGTTTAGATGGGGTGGTGGGTTCAGACACTGGTTTTACTTCTCTTGCTTCAGATCCTGAGACAAAGCAGAAATGTTACGGATCTGGATCCCTTAAGCAGGAGAGATCTGGTAACACTGAAGATGACTGGAGAAGCTCAAAGCTGGCTAAAACTGACGATTTCTCTACCTCCACAGCAATGTTGCTTCAGCAAAGAAACACTTCAACTCTAAGATCTAGTGGCTCTCTTTTTTCTGATGCTCAGCCACAACAGCAAATGCTGAGCTTTGCTTCTCCCAAACCAGAAATACAGAATGCTGCATTGCCTTACTCTTACCACACTTTATCTGCTTACACTAGAAACGCAGGCTACAGCTCTGCCAGTTTAAATGGTGCAACCATGCACGGAATTGTATCAGGGTCTAGGGGACCATTCACTCCATCTCAGTGGCTTGAGCTAGAACACCAAGCCTTGATCTACAAGTACATCACTGCAAACGTGCCTGTACCTTCTAATCTACTCATTCCCATCAGAAAAGCGCTTGATTCCGCCGGTTTCTGTAACTACTCAGGCGGATTTCTGAGACCCAACCCATTGGGATGGGGATCTTTCCATCTGGGATTCTCGAGCAACACCGATCCTGAGCCTGGAAGGTGTCGTAGGACTGATGGAAAGAAATGGCGGTGCTCGAGAGATGCCGTTCCTGATCAGAAATACTGTGAGCGACATATGAACAGGGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACTGGAACTGTCACCACCACTACTTCAAAGCTTATGCCAAATACTTCCTCATCTGTATCAGTGATGGTAGGCGGAGCACAAAACAGCCTCGCCTCTGCTCACCACCAAGCTAAGACTTTACAGCTTAATGCATCTAATCATGGTTCTGTGGCAGGCAACGTCAACAGGATGCTTGTGAATGGCAAAGTGAATGCTAATGTGGGCAAGCAAGATACTCCAGGGCTGACCATGTTTCCTCCTGCCGTGGAGTTGAAATCGAAGGAGAGTTCCTTTATACTTCAGGAGCCGCAATTCCCATATGAAGAAGCACCAAGGACTCAATTTGGGGTCGTGACTTCAGACTCTTTGATTAATCCCTCGCAAAAGAGCTCTGTCCTAATGAACAACACCAACTTCGGTTCCCCTCAGAATCCCTCTGATCAACAACCCAATGAGGCACCCCAATCCCTTAGGCATTTCATTGACGACTGGCCTAAGAACCAGTCTGATCGCGGCAGTCTTTCATGGCAAGATGTAGATAGAACTCAACTATCGATTTCAATCCCTATGGGTACCGCTGACTACTTTCCATCTACCTCCTCTGCCACCAACGACAAACTCACGCTGTCACCACTCAGATTAACCCGAGAGTTAGAGCCAATGCAGAAGGGTTTGGGATTGGGAAGCAGCAGTAGCAGCAGCCTGAACGAATCAGGTACTAGTAGGCAGGCTAATTGGATTCCAATTAGTTGGGAGAATTCACTTGGGGGTCCTCTAGGAGAAGTTCTGCACCATAGCAATAACAATGGAAATGACTGCATGAAGAATTCGTCTGCTCTTAACCTCGTGACTGATGGCTGGGACAGTAGCTCTCCGTTAGGGTCCTCTCCTACAGGGGTTCTACAGAAGACTACATTCAGGTCTCTGTCCAATAGTAGCGCTGGAAGTAGCCCAAGGGCAGAGAACAAAAACCATGACGGGGCTAGCTTATGCAATGATCTACTCGGATCAACTCTTCGAAATTCTTCGTGTTTGCCTTCCTTGTAA 1812 0.4774 MDFWGVGLDGVVGSDTGFTSLASDPETKQKCYGSGSLKQERSGNTEDDWRSSKLAKTDDFSTSTAMLLQQRNTSTLRSSGSLFSDAQPQQQMLSFASPKPEIQNAALPYSYHTLSAYTRNAGYSSASLNGATMHGIVSGSRGPFTPSQWLELEHQALIYKYITANVPVPSNLLIPIRKALDSAGFCNYSGGFLRPNPLGWGSFHLGFSSNTDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKPVEGQSGHAVTGTVTTTTSKLMPNTSSSVSVMVGGAQNSLASAHHQAKTLQLNASNHGSVAGNVNRMLVNGKVNANVGKQDTPGLTMFPPAVELKSKESSFILQEPQFPYEEAPRTQFGVVTSDSLINPSQKSSVLMNNTNFGSPQNPSDQQPNEAPQSLRHFIDDWPKNQSDRGSLSWQDVDRTQLSISIPMGTADYFPSTSSATNDKLTLSPLRLTRELEPMQKGLGLGSSSSSSLNESGTSRQANWIPISWENSLGGPLGEVLHHSNNNGNDCMKNSSALNLVTDGWDSSSPLGSSPTGVLQKTTFRSLSNSSAGSSPRAENKNHDGASLCNDLLGSTLRNSSCLPSL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01540 603 Pfam QLQ 143 177 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte17g01540 603 Pfam WRC 213 255 IPR014977 -
Pte17g01540 603 ProSiteProfiles WRC domain profile. 212 256 IPR014977 -
Pte17g01540 603 MobiDBLite consensus disorder prediction 386 408 - -
Pte17g01540 603 MobiDBLite consensus disorder prediction 562 581 - -
Pte17g01540 603 MobiDBLite consensus disorder prediction 562 578 - -
Pte17g01540 603 PANTHER GROWTH-REGULATING FACTOR 5 106 449 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pte17g01540 603 SMART QLQ_2 142 178 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte17g01540 603 MobiDBLite consensus disorder prediction 24 52 - -
Pte17g01540 603 MobiDBLite consensus disorder prediction 24 40 - -
Pte17g01540 603 ProSiteProfiles QLQ domain profile. 143 178 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01540 Pte-Chr17 29677172 29680906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01540 29 604 GRF Transcription Factor Family AT2G22840 42.623 3.56e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pte17g01540 WRC 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01540 - - qsa:O6P43_015955 815.068