Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01533 ATGCCCATGTATCAGACATCTAGAGGCAGAAGAGATGGGGATGTGCAGCTGGATTTTGGCGATGGTGTCCAAGTTCTGGATTTGGAAACCGCTGTAAAAGATGGGGTTTTGGACGGTGGAGGTGGGTTGAACTGTGTTGGTGGCCTTTCAGAGAAACTGGATCTGAAGAAGTTAATTCAGGAGCTTGATTCCATTGATGTGCCCTCGGTTTTTATTTGTCCTATCTCGTTGGAGCCAATGCGAGATCCTGTGACTCTTTGCACGGGTCAGACATACGACAGATCCAACATTGTCAAATGGTTTGCTCTCGGTCATTGCACTTGTCCCACTACAATGCAAGAGCTTTGGGACGATTCTGTCACACCCAATAAGACTCTTCATCAACTCATTCATAGTTGGTTCTCTCAAAAGTACTCGGCCATGAAGAAAAGGTCTGAGGATGTGCAAGGAACATTGTTGGAACTCTTGGATACGCTTAACAAGGTAAAGAGTCAAGCAAGAATCCAAATTCTCAGAGAGATTCGGAAGGTTCTCGCTGCCCATCCGTTAACTAAGCAAACACTAGCACGTAGTGGTAAGCTTTCTTTGATTTCCTTTTTGCTGGGTCCTTTCACTTCCCATGCAGTTGGCTCGGAAGCAATTGGGATTCTTGTCAATTTGGATATTACCGCTGAATTGAGATCAGATTTGATGGAGCCTGCCAAGATATCAGTTATAGTGGATATTATGAATGAGGGAACGATAGAGACAAAAATCAATTGTGTCAAATTGATTTTAATTTTGATAGAAGGAAATGATTCAAGGATGGCGATCGTGTCGAGCCTGAGCCTCCTGGTTGGGTTGTTGAGATTAGTTAGGGACAGGAGATACCCAAGTGGGATGTTGATCGGACTCATGTTGCTCAAGGCCATTTCTTCTCATGCAGCAGCTAGGAACGCAGTTGTGAGCATGGGAACCATTCCTCAATTAATTGGCTTGTTGCCTTCCTTGAATAATGAGTGCCTGGAATTAGCTCTATATATTTTGGAGGTGCTGTCAACTCTTCCGGAGGGTAGACAGGCTCTAAAAAACTGTCCAAACATTATACCCAATGTTGTGAAGTTATTGATGAAGGTTTCAGAAAGCTGCACCCAGTTTGCTTTATCTATCTTGTGGGCCGTTTGCATGCTTGCACCTGAAGAATGTGCTTTACACGCCTTTGAGGCAGGTTTGGCTACTAAGCTGCTGCTTGTTATTCAGAGTGGCTGCAATCCTGTGTTAAAACAGAAGTCAGCTGAGTTGTTGAAATTGTGTAGCATGAATTATTCAGCCTCCTTGTTGCTTTCTAAGTTTAAGCTCACAACAACTATACAATGA 1356 0.4366 MPMYQTSRGRRDGDVQLDFGDGVQVLDLETAVKDGVLDGGGGLNCVGGLSEKLDLKKLIQELDSIDVPSVFICPISLEPMRDPVTLCTGQTYDRSNIVKWFALGHCTCPTTMQELWDDSVTPNKTLHQLIHSWFSQKYSAMKKRSEDVQGTLLELLDTLNKVKSQARIQILREIRKVLAAHPLTKQTLARSGKLSLISFLLGPFTSHAVGSEAIGILVNLDITAELRSDLMEPAKISVIVDIMNEGTIETKINCVKLILILIEGNDSRMAIVSSLSLLVGLLRLVRDRRYPSGMLIGLMLLKAISSHAAARNAVVSMGTIPQLIGLLPSLNNECLELALYILEVLSTLPEGRQALKNCPNIIPNVVKLLMKVSESCTQFALSILWAVCMLAPEECALHAFEAGLATKLLLVIQSGCNPVLKQKSAELLKLCSMNYSASLLLSKFKLTTTIQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01533 451 CDD RING-Ubox_PUB 68 120 IPR045210 -
Pte17g01533 451 PANTHER WDSAM1 PROTEIN 63 437 IPR045185 GO:0061630
Pte17g01533 451 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Pte17g01533 451 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Pte17g01533 451 Gene3D - 231 446 IPR011989 -
Pte17g01533 451 SUPERFAMILY RING/U-box 62 137 - -
Pte17g01533 451 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
Pte17g01533 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 151 IPR013083 -
Pte17g01533 451 SUPERFAMILY ARM repeat 154 433 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01533 Pte-Chr17 29616035 29618586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01533 1 452 U-box Gene Family AT5G65920 59.780 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01533 - - qsa:O6P43_015965 642.499