Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01526 ATGAGTGTTGCTGATGTTTCTAAAACAGACTTTGGTCTTGGCCTTGGTCTTGGTCCTTGTCTTCATGATAAGCTCAAGTTCTCAGAAAGTTGCTCTGGCGAACCAACTCTTACTTTGGGACTAGGACGCGCATCCAATAATAACAAGCCCTGGCGATTTGAAGCTGCCAAGAGTACTGAATTGACTGATCAATTGCATCAGCAGTCATCGTCCACCCCAAGTGCAACGATCCCTTCATTTTCCAACTCGTCAAGCATCAAGAAGGAGAGAGACTCCGGCCAGGAAGATGAAATGGATACGTTAGTCCTCCATTCTCCACGGGCTAGTGATGAAGATGAAATCGGTTATCCCAGGAAGAAACTTAGGCTCACGAAAGAACAGTCCGCTGTGTTAGAAGAGAGCTTCAGAGAACACCCCACTCTCAATCCAAGACAAAAGCAAGAGTTGGCCAGAAAGTTGAACCTACAGGCAAGGCAAGTAGAAGTATGGTTCCAGAACAGGAGAGCCAGAACAAAGCTGAAGCAAACTGAAGTTGACTGTCAGTTGCTGAAGAAATGTTGCGAGAAACTTGCAGAAGAGAACAAGAGATTGCATAAAGAACTGCACGAACTTAAATCATTGAAATTAACAGAGGCAAATTCCAGAGCGTATTCCATGCAGCTTCCTGCAGCTACCCTTACAGTCTGTCCTTCTTGTGAGAGAATTGGTGGGGATACAGATGAGAGCTCGCCTATGAAATCAAACACTTCCTCAGCCGGGTCGAAGGTTCAGCGACATTTCTACAAGAATAATCCTTTTAGACATCATTAA 810 0.4494 MSVADVSKTDFGLGLGLGPCLHDKLKFSESCSGEPTLTLGLGRASNNNKPWRFEAAKSTELTDQLHQQSSSTPSATIPSFSNSSSIKKERDSGQEDEMDTLVLHSPRASDEDEIGYPRKKLRLTKEQSAVLEESFREHPTLNPRQKQELARKLNLQARQVEVWFQNRRARTKLKQTEVDCQLLKKCCEKLAEENKRLHKELHELKSLKLTEANSRAYSMQLPAATLTVCPSCERIGGDTDESSPMKSNTSSAGSKVQRHFYKNNPFRHH* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01526 269 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 34 251 - -
Pte17g01526 269 Pfam Homeodomain 118 172 IPR001356 GO:0003677
Pte17g01526 269 MobiDBLite consensus disorder prediction 88 116 - -
Pte17g01526 269 MobiDBLite consensus disorder prediction 59 116 - -
Pte17g01526 269 SMART halz 174 217 IPR003106 GO:0006355|GO:0043565
Pte17g01526 269 SUPERFAMILY Homeodomain-like 110 175 IPR009057 -
Pte17g01526 269 Gene3D - 113 179 - -
Pte17g01526 269 ProSiteProfiles 'Homeobox' domain profile. 118 174 IPR001356 GO:0003677
Pte17g01526 269 Coils Coil 180 210 - -
Pte17g01526 269 FunFam Homeobox-leucine zipper protein 18 105 179 - -
Pte17g01526 269 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Pte17g01526 269 SMART HOX_1 116 178 IPR001356 GO:0003677
Pte17g01526 269 MobiDBLite consensus disorder prediction 60 87 - -
Pte17g01526 269 MobiDBLite consensus disorder prediction 241 258 - -
Pte17g01526 269 CDD homeodomain 117 175 IPR001356 GO:0003677
Pte17g01526 269 MobiDBLite consensus disorder prediction 237 269 - -
Pte17g01526 269 Pfam Homeobox associated leucine zipper 174 207 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01526 Pte-Chr17 29524644 29526600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01526 1 235 Homeobox Transcription Factor Family AT2G22800 50.622 9.13e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte17g01526 Homeodomain 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01526 K09338 - tcc:18591911 232.261