Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01512 ATGACTTCTGATGATTATACAGACCCACAATCATCTCCTCTCGATCATATAACTCTGCTACGGGATCATAACGAAGTTCTCTTCATTTCAGCCACTCATGATTCATCTTCACTCTCTTGTCCTATTTTTTGTACTACAACTCGAGATCACATGAGAGGATGTCGCCCAGAGCTTTCACCGCATGATCATGAGTATGGCAGTTCAATCTTGCACGTGGGATCAGGTAACTTCCAAAAGATGTCTACTTCACCTCTTCCAATTTTCAACCAAAGTAGCAGTACTTGTGGTCACACTTCAGCTTTGTACAAGGAAGAAGATCAGAAAAGCAATAAGATGTCTGCTAAATGGATGCCTTCAAAAACGAAATTTACGATACAGAAAACAACGGTAGAAAGCACAGCAACTGGTAAACCCACAAAAGATTCTCCGAGACTACGTAACCAGCAGCATGGCTGCAGAGAGCTCAACGCTAGTACGTCTTCGGCCAAAACCGGCAAAAACACGATTAGGGTTTGTGCCGACTGTAACACGACGACTACCCCACTTTGGAGGAGTGGCCCTAGGGGTCCGAAGTCACTTTGCAATGCATGCGGCATTAGGCAACGAAAGCAACGAAAGGCAGAGACCGAAACTTCAGGAGCTGCTGAAAATGGTTCGCCTCTACCCGAAGCATCTTCTACAAAAGCTAGGAAACTGCTCGCCAAGGGGAAGAAGCCTCGAATAAACCATTTAGCTCAGTTCAAGAGTAAGTCCAAGCCTGTAGCATGTACATCCCAAAGGGAACGTAAGCTTTCTTTCAAGGATTTCTCATTTAGTTGGAACAATAACTCAGCTTTCCATCAAGCCTTTCCTCAAGATGAGGTTGCTGACGCTGCGATTCTGCTAATGGCGCTTTCATGTGGTCACCTTTGA 912 0.4507 MTSDDYTDPQSSPLDHITLLRDHNEVLFISATHDSSSLSCPIFCTTTRDHMRGCRPELSPHDHEYGSSILHVGSGNFQKMSTSPLPIFNQSSSTCGHTSALYKEEDQKSNKMSAKWMPSKTKFTIQKTTVESTATGKPTKDSPRLRNQQHGCRELNASTSSAKTGKNTIRVCADCNTTTTPLWRSGPRGPKSLCNACGIRQRKQRKAETETSGAAENGSPLPEASSTKARKLLAKGKKPRINHLAQFKSKSKPVACTSQRERKLSFKDFSFSWNNNSAFHQAFPQDEVADAAILLMALSCGHL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01512 303 CDD ZnF_GATA 171 205 IPR000679 GO:0006355|GO:0043565
Pte17g01512 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 208 - -
Pte17g01512 303 Gene3D - 166 263 IPR013088 GO:0006355|GO:0008270
Pte17g01512 303 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 73 302 - -
Pte17g01512 303 SMART GATA_3 166 218 IPR000679 GO:0006355|GO:0043565
Pte17g01512 303 Pfam GATA zinc finger 172 206 IPR000679 GO:0006355|GO:0043565
Pte17g01512 303 ProSiteProfiles GATA-type zinc finger domain profile. 166 202 IPR000679 GO:0006355|GO:0043565
Pte17g01512 303 MobiDBLite consensus disorder prediction 200 227 - -
Pte17g01512 303 ProSitePatterns GATA-type zinc finger domain. 172 197 IPR000679 GO:0006355|GO:0043565
Pte17g01512 303 MobiDBLite consensus disorder prediction 129 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01512 Pte-Chr17 29444420 29446192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01512 113 303 C2C2-Gata Transcription Factor Family AT4G26150 36.486 1.08e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte17g01512 GATA 5.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01512 - - tcc:18588059 207.223