Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01497 ATGAGTATATGCCACACCGGAGACGATGTCACGGATCAGCTGGGAAGCCGAAAGAATGTTAGTACTGCACCAATGTGCGATCTTGGTTTAAGTTTTGGTTTTGGGTCTTTCTTTTGTCTTATAGAATCTGATGGTTTGGACGTCTATATATATGACTATTTCATAAAAAAGAAGTTGCATGCAACTGCAAAGGCATTTCAAGCTGAAGCGAAGGTGTCAATAAGTGTCACGGTTCTCTTGTTCTACCCCGAAGATGCTTTAGCTATCGATGCTCCTGGTGGTTTTCTTTTGGAGTGGTGGTCTGTATTCTGGGACATATTCATGGCTAGGACAAAGGACAAGCGCTCAGAATCAGCATCATCTTCGATTCAGACTCAGCTTAGTAGGACCAGAGAACTTCAGAAAAGACAGGGACAAGAGGCTTCGAGTCCTCAGCAGCTTCAAGAAATTGAAATGCAACTCTTTTTGCAAAGGCAAGCCCAGCAGCAGCAGCACCTACAGAAAAGGGATGGGATGCAAGTTGTCAACCGAGGCATGTCGAGACATCTCCAACAAGTTCAAAATTGGAGTCAGCAGCTTCCGGGGAGCACTCAAGATATGCAGAATGAGATGAGTTCAATGATGAGGACTTGCACCACTCCTTCTGAAGGATTGTTACTTGGATTTCAAGGTTCAAAGCAAGGGGACGACAACATGACTCTTAGAGGATGGCCACTGGCGGGACTAGATCAACTTTATTCTCCCCAGAAAAAGACAATAATGCAGTCTCCTCTGTCCCGTGGTCAGCTACACCTACAACAACAGCTTATGCTTCAGCAGCAGCAGAATTTGGCATTCCCATCTGCTAATGAAATAGAAAGTAGGAGAATACAAATTCTCATTGACAATCAAAATGTATATCCTGCAAAAAATAGGCTGTTAGGTAATGTTGGTGAATTAGTACCTAGAATTGGATCTCCATTGCTAGTCGGTTTCCCTGGATTGCCACATGATGCAGACTCTGGTATGCTACTGAAGTTTTACCACCAGCAACTGCAGCAGAACAATCAGAAGCAGCAAGAATATTTGCGTCAGCATCTTCATTTGCTGCAGCAGTCTGCAAATCAACCCAAGCAGCCAGAGAAAACCATTGCTGGAAGAAGCATCGCAGCTGATTGCTGCATGAATAATTCATTTCAAGGAAATAATCAGGCTTCCAAAAAAAGAGCTGGACGGAAGAGAAAGCAAGCAGTGTCATCTTTAGGTTTTTCACATAGCTCAGGAACTGCAAATACCAGTGCAATAGCTCCTACTCCACCGTCCACAACTTCAACACACACCTCAGAAGAGGCAGCCATTCTGCAGAATGCATCTTCCAAGTCCTTGCTCATGTTTCCTTCTGACGGTTTATTCTCTCTCTCATCTGCCTGGAATCAAATGTCAGCTCAATTAGGCCAATATTTGGGTCATTGCTCCTTCGATGATAATGTTGAGTCATATTTTTCTCCTGATGGAGGAGACCCTAGTGATGAAGTTGGTAATTTTCAGGACATAGGTAAAGCCTTATCTCGAAACTTCAATTCAGGCTTCAAGTTTAAGGAGATCCAACTTATTCCTGCAAGTACCAGTAAAGTTGAATGTTGTGACTTATCGTCAGATGGAAAATTGCTTGCTACGGGTGGCCATGACAGAAAGGTGTCATTATGGTCTACTGAATCTGGTTCTTTGAAGTGTAATCTGGACGAGCATTCTAAACGGATAACTGATGTGAGATTCAACTCCAGCGTGTCAAGTCTTGCTACATCTTCAGCCGACAAAACTGTTAGGATTTGGGACATTGGTAAACCTGGCTATTCACTTCGTACCTTCACTGGACATTCAACTGCTGTCGTGTCAGTGGACTTCCACCCTAGTAAAGAAGAGCTTGTCTTCTCTTGTGACATTAGTAATGAGATTAGATGCTGGAGTATCAAGAATTGTAGTCTTGTTGGTCTTTTCAAGGGTGGCGCCACACAGATCAGATTTCAAACTAGCAGTGGAAGTCTTCTTGCAGCTGCAGTGGAGAATCTGATATCAATTCTTGACGTCGAGACCTTATCTTGCAGGCTTAAATTACAGGGTCACCAGAACCTCGTTCATTCTGTTTGCTGGGATTCCTCTGGTCAATATCTTGCTTCTGTGAGTGAAGACTTGATCAGAATTTGGAATGTTACTTCTGGTTGCAAAGGGGAATGTCTTCACGAATTAAAATCTGCTGGCAACAAATTCAATGCCTGTGTCTTTCATCCCTCCAATCCGGTTTTGGTTATTGGTTGCTACGAGACTCTGGAGCTTTGGAACTTTGGTGAGAACAAGAGGATGACTCTACCTGCACATGACAATGTCGTGTCTTTTTTGGCTGTGTCAAATGTATCTGGATTAATTGCTTCAGCGAGTCGTGACAAGGGTGTCAAACTCTGGAAGTAA 2445 0.4339 MSICHTGDDVTDQLGSRKNVSTAPMCDLGLSFGFGSFFCLIESDGLDVYIYDYFIKKKLHATAKAFQAEAKVSISVTVLLFYPEDALAIDAPGGFLLEWWSVFWDIFMARTKDKRSESASSSIQTQLSRTRELQKRQGQEASSPQQLQEIEMQLFLQRQAQQQQHLQKRDGMQVVNRGMSRHLQQVQNWSQQLPGSTQDMQNEMSSMMRTCTTPSEGLLLGFQGSKQGDDNMTLRGWPLAGLDQLYSPQKKTIMQSPLSRGQLHLQQQLMLQQQQNLAFPSANEIESRRIQILIDNQNVYPAKNRLLGNVGELVPRIGSPLLVGFPGLPHDADSGMLLKFYHQQLQQNNQKQQEYLRQHLHLLQQSANQPKQPEKTIAGRSIAADCCMNNSFQGNNQASKKRAGRKRKQAVSSLGFSHSSGTANTSAIAPTPPSTTSTHTSEEAAILQNASSKSLLMFPSDGLFSLSSAWNQMSAQLGQYLGHCSFDDNVESYFSPDGGDPSDEVGNFQDIGKALSRNFNSGFKFKEIQLIPASTSKVECCDLSSDGKLLATGGHDRKVSLWSTESGSLKCNLDEHSKRITDVRFNSSVSSLATSSADKTVRIWDIGKPGYSLRTFTGHSTAVVSVDFHPSKEELVFSCDISNEIRCWSIKNCSLVGLFKGGATQIRFQTSSGSLLAAAVENLISILDVETLSCRLKLQGHQNLVHSVCWDSSGQYLASVSEDLIRIWNVTSGCKGECLHELKSAGNKFNACVFHPSNPVLVIGCYETLELWNFGENKRMTLPAHDNVVSFLAVSNVSGLIASASRDKGVKLWK* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01497 814 Pfam LisH 46 70 IPR006594 GO:0005515
Pte17g01497 814 Gene3D - 335 659 IPR015943 GO:0005515
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 782 814 - -
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 531 568 - -
Pte17g01497 814 SMART Lish 42 74 IPR006594 GO:0005515
Pte17g01497 814 ProSitePatterns Trp-Asp (WD) repeats signature. 592 606 IPR019775 -
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 573 606 - -
Pte17g01497 814 MobiDBLite consensus disorder prediction 118 144 - -
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 652 IPR001680 GO:0005515
Pte17g01497 814 PANTHER TRANSCRIPTION ACTIVATOR MSS11 176 814 - -
Pte17g01497 814 SMART WD40_4 609 649 IPR001680 GO:0005515
Pte17g01497 814 SMART WD40_4 566 605 IPR001680 GO:0005515
Pte17g01497 814 SMART WD40_4 691 729 IPR001680 GO:0005515
Pte17g01497 814 SMART WD40_4 775 814 IPR001680 GO:0005515
Pte17g01497 814 SMART WD40_4 735 773 IPR001680 GO:0005515
Pte17g01497 814 SMART WD40_4 524 563 IPR001680 GO:0005515
Pte17g01497 814 MobiDBLite consensus disorder prediction 412 443 - -
Pte17g01497 814 CDD WD40 531 814 - -
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 573 606 IPR001680 GO:0005515
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 733 IPR001680 GO:0005515
Pte17g01497 814 Gene3D - 660 814 IPR015943 GO:0005515
Pte17g01497 814 PRINTS G protein beta WD-40 repeat signature 550 564 IPR020472 -
Pte17g01497 814 PRINTS G protein beta WD-40 repeat signature 801 814 IPR020472 -
Pte17g01497 814 PRINTS G protein beta WD-40 repeat signature 592 606 IPR020472 -
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 782 814 IPR001680 GO:0005515
Pte17g01497 814 Pfam WD domain, G-beta repeat 572 605 IPR001680 GO:0005515
Pte17g01497 814 Pfam WD domain, G-beta repeat 694 729 IPR001680 GO:0005515
Pte17g01497 814 Pfam WD domain, G-beta repeat 536 563 IPR001680 GO:0005515
Pte17g01497 814 Pfam WD domain, G-beta repeat 612 648 IPR001680 GO:0005515
Pte17g01497 814 Pfam WD domain, G-beta repeat 779 814 IPR001680 GO:0005515
Pte17g01497 814 SUPERFAMILY WD40 repeat-like 524 814 IPR036322 GO:0005515
Pte17g01497 814 MobiDBLite consensus disorder prediction 393 443 - -
Pte17g01497 814 ProSiteProfiles LIS1 homology (LisH) motif profile. 42 74 IPR006594 GO:0005515
Pte17g01497 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01497 Pte-Chr17 29338260 29344267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01497 608 813 Miscellaneous Gene Families AT5G08390 25.472 8.18e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pte17g01497 WD40 0.2 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01497 - - jre:109019794 656.751