Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01489 ATGGATAAGAAGAAAGTGGCTGTTCCTCTGGTATGCCATGGCCATTCTCGACCAGTTGTCGATCTGTTTTATAGTCCAGTTACGCCGGATGGGTTCTTCCTCATCAGTGCCAGCAAGGATTCTAGTCCAATGCTCAGAAATGGAGAGACGGGAGATTGGATTGGAACATTTGAAGGTCATAAGGGTGCAGTGTGGAGTTGCTGTCTAGACACTAAGGCTTTGCGTGCTGCAACTGGCTCTGCTGATTTCACTGCGAAAGTATGGGATGCATTAACAGGAGATGAATTACATTCGTTTGAGCACAAACATATTGTACGTGCTTGTGCTTTTTCTGAGGATACACATCTTTTACTTACTGGAGGATTGGAGAAAACACTCCGTATATATGATCTGAATCGCCCTGATGCACCTCCAAGAGAAGTGGATAAATCTACTGGTTCAATTAGAACCGTTGCATGGTTTCATAGTGATCAGATGATATTAAGTTCTTGTACTGATATTGGTGGTGTCAGGCTATGGGATGTGAGAATTGGTAAGATGGTCCAAACACTTGAGACCAAATCGTCTGTGACCAGTGTTGAAGTGAGTCAGGATGGTCGTTATATCACTACTGCTGATGGTTCTACTGTTAAGTTTTGGGATGCAAATTACTATGGATTGGTAAAGACATACGACATGCCTTGCACTGTCGAATCAGCTTCTTTGGAACCGAAGTATGGGAATAAGTTCATTGCCGGGGGAGAAGACATGTGGGTTCATGTATTTGATTTCCTCACTGGTGAAGAGATAGCATGTAACAAGGGTCACCATGGACCCGTGCATTGTGTTCGTTTCTCTCCTGGAGGGGAATCATATGCCTCGGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGACCATTAACCCAAGACGAGACTGATGCAGTTCCCACTGATGGTTCAATTAACAAGGTGAAGGTCGTTGCTGAAGAGGTTTTACGAAAGATCGAGGGTTCAAGTAACAAGGTGAAGGTCGTTGCTGAAGAGGCAGTGAAGGAATGA 1044 0.4454 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTKALRAATGSADFTAKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGLEKTLRIYDLNRPDAPPREVDKSTGSIRTVAWFHSDQMILSSCTDIGGVRLWDVRIGKMVQTLETKSSVTSVEVSQDGRYITTADGSTVKFWDANYYGLVKTYDMPCTVESASLEPKYGNKFIAGGEDMWVHVFDFLTGEEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTQDETDAVPTDGSINKVKVVAEEVLRKIEGSSNKVKVVAEEAVKE* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01489 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Pte17g01489 347 CDD WD40 54 299 - -
Pte17g01489 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Pte17g01489 347 SMART WD40_4 134 174 IPR001680 GO:0005515
Pte17g01489 347 SMART WD40_4 92 130 IPR001680 GO:0005515
Pte17g01489 347 SMART WD40_4 217 256 IPR001680 GO:0005515
Pte17g01489 347 SMART WD40_4 50 89 IPR001680 GO:0005515
Pte17g01489 347 SMART WD40_4 177 214 IPR001680 GO:0005515
Pte17g01489 347 SMART WD40_4 5 47 IPR001680 GO:0005515
Pte17g01489 347 SMART WD40_4 259 298 IPR001680 GO:0005515
Pte17g01489 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Pte17g01489 347 FunFam Serine-threonine kinase receptor-associated protein 8 320 - -
Pte17g01489 347 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 333 - -
Pte17g01489 347 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Pte17g01489 347 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Pte17g01489 347 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Pte17g01489 347 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Pte17g01489 347 Gene3D - 9 340 IPR015943 GO:0005515
Pte17g01489 347 SUPERFAMILY WD40 repeat-like 4 302 IPR036322 GO:0005515
Pte17g01489 347 PRINTS G protein beta WD-40 repeat signature 76 90 IPR020472 -
Pte17g01489 347 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Pte17g01489 347 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Pte17g01489 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01489 Pte-Chr17 29284152 29287862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01489 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 30.818 1.79e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01489 K13137 - qsu:111987820 625.935