Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01487 ATGAAAGGAGAAATACAGCTAGAGTCATCTGTAGGGGGCGTGGAAAACCCTAGTGATTCCGATCCATTGCTTGAGAACCAGGAAGAATCATTACAGCCAACTTCCACTGAAATCAACGATCATGAGGATGTCGAAGGTGGTTCTCCTCCTTGCTGTCGAATCTGCCTTGAAAGTGATTTAGACCCAGATGATGAATTAATATCTCCATGCATGTGCAAAGGCACCCAGCAATTTGTTCATCGTGCATGTCTCGATCATTGGCGCTCAGTTAAGGAAGGTTTTGCTTTCTCACATTGCACCACTTGCAAGGCGCAATTTCACCTTCGAGTTGAATTGTATGAGGATAACTCTTGGCGTAAAATAAAGTTCAGAATCTTTGTTGCTAGAGACGTTTTCCTTGTATTTTTGGCTGTACAAACCGTGATTGCTGCATTGGCTGCATTTGCATACTTGATGGATAAAAATGGGTCTTTCAGGAATTCTTTCAATGATAGTTGGGATCGTATACTGTCAAAACATCCGATACCATTTTATTACTGTATAGGAGTGATGGCTTTCTTTGTGCTACTTGGATTTGTTGGTCTCATACTTCACTGCTCCTCTGTCAATCCTAATGACCTGCGAATGGCTGGCTGCCACAACTGTTGTTATGGATGGGGCATCTTGGATTGTTTTCCAGCATCAATGGAGGCATGCTTTGCCATTGTGGTTGTTTTCATTGTAATATTCGCTATACTTGGCATAGCTTATGGTTTCCTTGCAACCACCATGGCTATTCAAAGAATTTGGCAGAGACACTACCACATTCTTACCAAGAGAGAGCTCACAAAGGAGTACATAGTCGAGGATTTGAATGGGTGTTATACTCCACCGAAATTGGACAAGGAACATGAGGAGCGCCTGAAAATGCTAAAACTTCTGTGA 924 0.4242 MKGEIQLESSVGGVENPSDSDPLLENQEESLQPTSTEINDHEDVEGGSPPCCRICLESDLDPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELYEDNSWRKIKFRIFVARDVFLVFLAVQTVIAALAAFAYLMDKNGSFRNSFNDSWDRILSKHPIPFYYCIGVMAFFVLLGFVGLILHCSSVNPNDLRMAGCHNCCYGWGILDCFPASMEACFAIVVVFIVIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDLNGCYTPPKLDKEHEERLKMLKLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01487 307 CDD RING_CH-C4HC3_MARCH 52 103 - -
Pte17g01487 307 SMART ringv_2 51 103 IPR011016 GO:0008270
Pte17g01487 307 Pfam RING-variant domain 52 102 IPR011016 GO:0008270
Pte17g01487 307 SUPERFAMILY RING/U-box 48 107 - -
Pte17g01487 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 117 IPR013083 -
Pte17g01487 307 MobiDBLite consensus disorder prediction 1 46 - -
Pte17g01487 307 ProSiteProfiles Zinc finger RING-CH-type profile. 44 109 IPR011016 GO:0008270
Pte17g01487 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 307 - -
Pte17g01487 307 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01487 Pte-Chr17 29273948 29278457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01487 1 308 C3H Transcription Factor Family AT1G11020 74.613 2.25e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01487 - - qsa:O6P43_023044 543.888