Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01478 ATGAAGGTTCAGTGTGATGTGTGTGAGAAGGCTCCAGCTGCTGTGATTTGTTGCGCAGATGAAGCAGCTCTATGTGCCAAATGTGACATTGAAGTTCATGCAGCGAACAAGCTTGCAAGCAAGCACCAAAGGCTACTTCTTCAAAATCTCCCCAACAAGCTTCCTAAATGTGATATATGCCAAGATAAGCCAGCCTTTATTTTCTGTCTGGAGGACAGAGCTCTGTTCTGTAAGGACTGTGATGAACCAATTCATTCAGCTAGTACACTTTCTGCAAACCACCAGCGCTTCCTGGCTACTGGAATCCGAGTGGCTTTGAGTTCTAATTGCTCCAAGGATGCTGAAAGAAATCGTACGGAGCCACCTAAACCTAAGAGAAATTCTGAACATATTTCCTTGAAAACCCCCTCACAGCAAGGGTCTAACTATGGATCCCCTTGGGCTGTGGACGACTTGCTTCAGTTTTCAGGATCTGATTCGTCTTCAAAGAAAGAATCTCTTGACTTCGGAGAGCTGGAATGGCTTGCAGATATGGGCCTTTTTGAGGAAGAAATCACTCAAGAAGCTATAGCCGCTGCTGAAGTCCCTCAACTTCCACCGTCACAAACAAGCAATAATACTTCATATAGAGCCCCCAAGTCGTACATGCCCTTCAAGAAACCTCGACTTGAAATCCTAGGTGAGGATGTTGAGCACTTTACTGTCCCTGATCTTGGTTGA 720 0.4542 MKVQCDVCEKAPAAVICCADEAALCAKCDIEVHAANKLASKHQRLLLQNLPNKLPKCDICQDKPAFIFCLEDRALFCKDCDEPIHSASTLSANHQRFLATGIRVALSSNCSKDAERNRTEPPKPKRNSEHISLKTPSQQGSNYGSPWAVDDLLQFSGSDSSSKKESLDFGELEWLADMGLFEEEITQEAIAAAEVPQLPPSQTSNNTSYRAPKSYMPFKKPRLEILGEDVEHFTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01478 239 MobiDBLite consensus disorder prediction 113 130 - -
Pte17g01478 239 CDD Bbox1_BBX-like 5 47 - -
Pte17g01478 239 Gene3D Classic Zinc Finger 1 93 - -
Pte17g01478 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Pte17g01478 239 MobiDBLite consensus disorder prediction 193 213 - -
Pte17g01478 239 CDD Bbox1_BBX-like 56 98 - -
Pte17g01478 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pte17g01478 239 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pte17g01478 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pte17g01478 239 MobiDBLite consensus disorder prediction 111 144 - -
Pte17g01478 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte17g01478 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 213 - -
Pte17g01478 239 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01478 Pte-Chr17 29188785 29191279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01478 1 163 Orphan Transcription Factor Family AT1G06040 63.690 1.05e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte17g01478 zf-B_box 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01478 - - cave:132189631 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g01478 17 29188785 29191279 Pte17g01478 17 29188785 29191279 RCT