Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01476 ATGCCGCTTCCGGTAAAGGAAAGCAAGCAAGGACAGGGAGTCACAGGTAGGGACTCCGATGAAACGGAGACTCCGTCTAATAATCTTTGGGTCGGAAATTTGTCTCCCGTTGTGAACGATACGGAACTCATGGAAATCTTCGCTCAATTTGGCGCGCTCGACAGCGTTTCTACCTACTCTTCACGGAGCTTCGCTTTTGTGTACTTCAAACGCATCCAAGATGCTAAGGTGGCGAAGGACGCGTTGCAAGGCACCGTTGTCCGTGGAAACTCATTGAAGATCGAGTTTGCAAGACCGGCAAGGCCATGTAGAAGTTTATGGATCGGTGGTATCAGCCCAGATGTTGCGAGGGAGGAATTGGAACGGCATTTTCTTGAATTTGGAAAAATTGAGGATTTTCGTTTAATAAGAGACAGAAATACTGCATTTGTTGATTATTTTAGCGTGGAAGATGCTACACAAGCCATGAAAAATATGAATGGAAAGCGCATGGGTGGAGACCAAATTCGCGTGGATTTCTTGCGGTCACAACCATTGAGAAGAGAACAGTGGGCTGATTCTAGAGATGCACAGTTTCTAGGTAGAAACATGACCAGTTCAGATCTCCATGCTGGTCAGAAAAGACCGCAGCAGTACTCGCCAACACTAATGGGTAGGAAAGGGGACAATCAACCTAGTAAGATCTTGTGGATTGGATACCCTCCCTCAGTTCAGATTGATGAGCAAATGCTTCACAATGCTATGATTTTATTTGGTGAAATAGAGAAAATTAAAAGTTACCCTTCCAGACATTATTCATTTGTTGAGTTTAGAAGTGTGGATGAGGCTAAACGTGCTAAAGAGGGTCTGCAAGGTCGACTTTTCAATGATCCTCGGATCACTATAATGTTCTCAAATAGTGACCTTGCACCAGGAAATGATTATCCTATTTTGTATCCACGAAATAAAGCTGAGATGTTCTTGAGTGAACATCCATTTCAACCTCTGCCGGGGGATAGCTTTGTTCATAATCGTGCCATAGCACAAACTGCCAGTGTGTTTGGACCAAATGCATCAATGAGGACTTTTAGTCCTCGTGGTAGTTTTGATCCGCTCCTTTCAGGTCCTGAGCTCGATGATCTGGTTCCTGGGCATAGATTTCAGGATGGTAAAATAGGTCCAAATTGGGGAAGGCCATCCCCTCCATCTGGAATATTTCCTTCTCCTGTATCTGAAATCATACCTCCCTCAAGATCAGCCATATCTGGTCCTTGGGATGTGCTTGACGCTAACCAATTTCATAGACACTCTAATAGGTCACGACTAGATGGAGCCTTGTCTGGCGAAGATCGTGGAGGATTATTGATGGAATATGGCCGTGCTAGTCCTGTTAGTGCGAGAATTGCGGGTCAAGCTCCTAGTCCAGGTCTGGCTGATAATGATTGTATATGGCGTGGTATTATTGCAAAAGGGGGAACTGCTGTTTGCCATGCACGTTGCCTACCTATTGGAAAGGGTATAGGAACTGATCTTCCTGAAGTTGTTAATTGCTCAGCCAGAACGGGTTTGGATTTGCTAACCAAACATTATGCAGATGCCATTGGATTTGAGATTGTATTCTTCTTACCGGATAGTGAAGATGATTTTGCTTCCTATACAGAGTTCTTACGCTACTTGGGTGCAAAAAACCGTGCTGGTGTTGCCAAATTTGATGATGGGACCACCTTGTTTTTAGTTCCTCCTTCTGAATTCTTGACAAATGTTTTAAAGGTTCCTGGACCTGATCGTCTATATGGTGTTGTTCTGAGGTTCCCGCCTGTTCCTAGTACCGTATCTTTACAAAAATCCCCTCAGTTGCCTTATTCCGAAAGACAGCGATTTCCTCCTCACCGAGGTGATTACAGTTTGATACCTTCAAATGAGGAAGTTGTTCTGCCAGAGTACAACAGAGATATACAGGATGACTCAAAGTTTCTTCCGAAATCCTTTTACCCACCTGTAACAGTGTCACATGCAATGCACTCTGTACCTCAGGAATATGCTTCTAGTAATAAATCTTCTTCCCAAGCTGGAGTGACATTGACGCCTGAGCTTATTGCCACTCTTACTTCTCTTTTGCCTGCTACTGCACAGACGTCTGGTTTAGAGGGTGCTCAGGCAGCTTTAAACTCGTCAGGTACCAGGCTTGATTCAATTTCAACCAGCGATGTAGACCAATCTCAATTGTGGAGACACGACCAACATATTCCAAACAATACAAGTCATTCATTTCAACAGTTGGGCAGCATGTACAATCCTCATGCTAGCCCGTACCAACCTTATGCATCAGTGTCTAACACACCTGGGCACCCTTCACAAGTGCTTCACGGCAGTTCCCAAATCCCAGATTCCACTAACAGCCTGCAGCATCAGGGTGCAGTTTCATCTGGACCGATGACTAACTACATGGTCCCTTCGCAGAGTGGGCAAGTTTCTGTTTCTACACAGGTCAGCCAGCAGTACCAGACTGGTGGTGTGCAAAAGGGCTATGGAGTGGTGCAGGGAATGGATTCCACCGCCTTTTACAATATGCAAGTGTCTCCACAATCCAATGTTCCTGTTGCCTCTTCTAATGTGGTTCATGGAGCTAATCCTTCCCAACCGCAAGATGTTATGCCATTTGCAGCTGACAATCAGATGCAAGCCCTTCAATCTGTTCCTGTAGGAGCTGGCCAAGGCACTGCAGATAATGAGGCTGATAAGAACCAGAGGTACCAATCAACACTCCAATTTGCTGCTAATTTACTTCTCCAGATACAGCAGAAGCAGAAAAGCAAAGGAGGACAAGGACCTGGGAATTGA 2820 0.4507 MPLPVKESKQGQGVTGRDSDETETPSNNLWVGNLSPVVNDTELMEIFAQFGALDSVSTYSSRSFAFVYFKRIQDAKVAKDALQGTVVRGNSLKIEFARPARPCRSLWIGGISPDVAREELERHFLEFGKIEDFRLIRDRNTAFVDYFSVEDATQAMKNMNGKRMGGDQIRVDFLRSQPLRREQWADSRDAQFLGRNMTSSDLHAGQKRPQQYSPTLMGRKGDNQPSKILWIGYPPSVQIDEQMLHNAMILFGEIEKIKSYPSRHYSFVEFRSVDEAKRAKEGLQGRLFNDPRITIMFSNSDLAPGNDYPILYPRNKAEMFLSEHPFQPLPGDSFVHNRAIAQTASVFGPNASMRTFSPRGSFDPLLSGPELDDLVPGHRFQDGKIGPNWGRPSPPSGIFPSPVSEIIPPSRSAISGPWDVLDANQFHRHSNRSRLDGALSGEDRGGLLMEYGRASPVSARIAGQAPSPGLADNDCIWRGIIAKGGTAVCHARCLPIGKGIGTDLPEVVNCSARTGLDLLTKHYADAIGFEIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSEFLTNVLKVPGPDRLYGVVLRFPPVPSTVSLQKSPQLPYSERQRFPPHRGDYSLIPSNEEVVLPEYNRDIQDDSKFLPKSFYPPVTVSHAMHSVPQEYASSNKSSSQAGVTLTPELIATLTSLLPATAQTSGLEGAQAALNSSGTRLDSISTSDVDQSQLWRHDQHIPNNTSHSFQQLGSMYNPHASPYQPYASVSNTPGHPSQVLHGSSQIPDSTNSLQHQGAVSSGPMTNYMVPSQSGQVSVSTQVSQQYQTGGVQKGYGVVQGMDSTAFYNMQVSPQSNVPVASSNVVHGANPSQPQDVMPFAADNQMQALQSVPVGAGQGTADNEADKNQRYQSTLQFAANLLLQIQQKQKSKGGQGPGN* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01476 939 Gene3D - 101 211 IPR012677 -
Pte17g01476 939 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 170 IPR000504 GO:0003723
Pte17g01476 939 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 293 IPR000504 GO:0003723
Pte17g01476 939 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 93 IPR000504 GO:0003723
Pte17g01476 939 Gene3D - 217 308 IPR012677 -
Pte17g01476 939 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 300 IPR000504 GO:0003723
Pte17g01476 939 CDD RRM_SF 29 95 - -
Pte17g01476 939 PANTHER RNA RECOGNITION MOTIF-CONTAINING 21 99 - -
Pte17g01476 939 Pfam SPOC domain 472 594 IPR012921 -
Pte17g01476 939 Gene3D - 6 100 IPR012677 -
Pte17g01476 939 FunFam Flowering time control protein FPA 19 101 - -
Pte17g01476 939 SUPERFAMILY RNA-binding domain, RBD 102 298 IPR035979 GO:0003676
Pte17g01476 939 SUPERFAMILY RNA-binding domain, RBD 18 101 IPR035979 GO:0003676
Pte17g01476 939 SMART rrm1_1 228 296 IPR000504 GO:0003723
Pte17g01476 939 SMART rrm1_1 28 95 IPR000504 GO:0003723
Pte17g01476 939 SMART rrm1_1 105 172 IPR000504 GO:0003723
Pte17g01476 939 MobiDBLite consensus disorder prediction 200 219 - -
Pte17g01476 939 FunFam flowering time control protein FPA 220 312 - -
Pte17g01476 939 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Pte17g01476 939 CDD RRM_SF 106 172 - -
Pte17g01476 939 MobiDBLite consensus disorder prediction 1 28 - -
Pte17g01476 939 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
Pte17g01476 939 MobiDBLite consensus disorder prediction 735 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01476 Pte-Chr17 29166712 29174460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01476 26 290 Eukaryotic Initiation Factors Gene Family AT1G49760 21.708 2.11e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01476 - - qsa:O6P43_000058 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g01476 17 29166712 29174460 Pte17g01476 17 29166712 29174460 RCT