Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01461 ATGAAAGTGCGTATTAGGGGGAGTCAAACAAGTACAAGTGAAAAAAGTGTACTGTGCATTGAAGAATCTGCTACTTATGTAAATGACAAAGCAGTGGAAGGATTTATCCATGCATGTAGAGGACACTTTCTCACAGAAGGTCAAGGTATAGCTGGAAAAGCTCTTCAGTCAAATCGTCCTTTCTTCTATCCGGATGTGAAGACATATGACATAAGTGAATATCCCCTCGTTCATCATGCTCGCAAGTATAGCTTGAATGCTGCAGTTGCAATCAGATTAAGGAGTACTTTCACCAATCATGATGATTACATATTAGAATTCTTTCTGCCTGTCAACATAACAGCAATTTCACAACAGAAACTTCTGTTAGACAACCTCTCAGGTACCATGCAGAGAATGTGTAGGAGTTTGAGGACAATTTCCGATGCTGAATTAGCTGACATAGGAGGAGCCAAAAGTGTGTTTCAGAACGGAGAGAACTCTCAATTCATGGCTATGTCTGGAGGAAACTGTCAGGTGAAACCCTTTGAAGGTAAGCGCGCTGCAGCTTCAGAGATAACCGTGAATGTATCAAGTATTGAAAAAGATAGGATTGAAGCTGGATGCTTGCCTTACCAGGCAATTAGTGGAGGAAGAAGGCAGGTGGAGAAAAAAATAAGTCCAGCCGAGAAGACTGTCAGTTTAAGTGTTCTCCAGCAATATTTTCCCGGTAGTCTAAAGAATGCAGCAAAGAGCATTGGTGTTTGTCCCACAACACTGAAACGCATATGCAGACAACATGGCATTTCTAGATGGCCCTCCCGTAAGATAAACAAAGTGAACAGATCATTAAAGAAAATACAGACCGTGCTGGAGACTGTCGAGGGAGTAGAGGGAGGGTTGAGGTTTGATTCTGTCACTGGAGAATTTGTGGCTGCAGGATCAGTTATTCAAGACACACAGAAGAATCTTTCATTTCACGACACTGATCTTCCTGCCCAAAACTCACAGCCTCTCTCTTGTGATGTATTCATGGCACCTCTAGCCTGCTGCACCAGTAAACACTTTGCCATTAAGTTGGAGGACGATGGTTTTTATATGGAAAGCAAGCAAGTTAAGCGATCAGCGACAGAGCTCAGCCCAAACCCTTGTGATGTTTCTACTGCTAATTGTAGCGAAGATTCAAAATCAATGGGTGTGAATGATGGACAAGACAAGCAAGATAGTCCTCTCACAAATCCTGGTTCTTGTCGTTCAGGCACCTCCCTGGAGTTTTGTTTTGCAAAAGGTGGAATATGCAGTATGGACAAGGGTGCTTCGAAATTAGACAATACCGACGGCCACGACTTCGTATCTCATAGTTCAAGCTCTTTGATTGCTGCAGAAGAAATGAGCATGGGCTTGGATGGGGATGAACATATTAGTGACCCACCCATGTCAAACGTGACAAACTTATCAAATGAATCAGATTCAGTACTCCACGGCAGTGCTTCAAGTTCTCAGGGCGTCAAGGAAATGAACCCTTCAGAGCTTGTTTCTCACGCTGCTGACTTGGGGTCAAAAATTATAGTGAAAGCAACCTACAATGAAGATACCATACGCTTCAAGTTCGAGCCTTCTGGTGGTTGTTTCCATCTGTATGAAGAAGTTGCTAGGAGATTCAAGTTACAAATTGGTACATTTCAGCTCAAATACTTGGATGATGAAGAGGAATGGGTTATGCTGGTGGATGACTCAGATTTCCAAGAATGTTTAGAGACACTGGATGATGTCAGCACGCGCACAGCGAAGTTCCTCGTCCGTGACATGCCGTATACCCTGAGTAGTTCCGGCAGTGGCAGCTGCTTGCTTGAAGGTACGTGGCAGCAAATGCAATCATAG 1860 0.4355 MKVRIRGSQTSTSEKSVLCIEESATYVNDKAVEGFIHACRGHFLTEGQGIAGKALQSNRPFFYPDVKTYDISEYPLVHHARKYSLNAAVAIRLRSTFTNHDDYILEFFLPVNITAISQQKLLLDNLSGTMQRMCRSLRTISDAELADIGGAKSVFQNGENSQFMAMSGGNCQVKPFEGKRAAASEITVNVSSIEKDRIEAGCLPYQAISGGRRQVEKKISPAEKTVSLSVLQQYFPGSLKNAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLETVEGVEGGLRFDSVTGEFVAAGSVIQDTQKNLSFHDTDLPAQNSQPLSCDVFMAPLACCTSKHFAIKLEDDGFYMESKQVKRSATELSPNPCDVSTANCSEDSKSMGVNDGQDKQDSPLTNPGSCRSGTSLEFCFAKGGICSMDKGASKLDNTDGHDFVSHSSSSLIAAEEMSMGLDGDEHISDPPMSNVTNLSNESDSVLHGSASSSQGVKEMNPSELVSHAADLGSKIIVKATYNEDTIRFKFEPSGGCFHLYEEVARRFKLQIGTFQLKYLDDEEEWVMLVDDSDFQECLETLDDVSTRTAKFLVRDMPYTLSSSGSGSCLLEGTWQQMQS* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01461 619 CDD PB1_NLP 515 595 IPR034891 -
Pte17g01461 619 Gene3D - 510 594 - -
Pte17g01461 619 ProSiteProfiles PB1 domain profile. 514 596 IPR000270 GO:0005515
Pte17g01461 619 Pfam PB1 domain 517 594 IPR000270 GO:0005515
Pte17g01461 619 MobiDBLite consensus disorder prediction 461 501 - -
Pte17g01461 619 ProSiteProfiles RWP-RK domain profile. 206 293 IPR003035 -
Pte17g01461 619 MobiDBLite consensus disorder prediction 369 409 - -
Pte17g01461 619 SUPERFAMILY CAD & PB1 domains 510 597 - -
Pte17g01461 619 MobiDBLite consensus disorder prediction 470 500 - -
Pte17g01461 619 PANTHER PROTEIN NLP8 9 606 IPR045012 GO:0003700
Pte17g01461 619 SMART PB1_new 514 596 IPR000270 GO:0005515
Pte17g01461 619 Pfam RWP-RK domain 225 273 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01461 Pte-Chr17 29087953 29090673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01461 3 613 NLP Transcription Factor Family AT3G59580 47.619 2.99e-158 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pte17g01461 PB1 3.9e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01461 - - tcc:18602418 637.491