Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01448 ATGGGTAAGCCTGCTGGGAAAAGAAAAGATCAGGTAGCTCAAAAGTCCACCCATGCAAATGCCAATGCGACTGCAAAGCCTTGTAAGTCCTCTGCTCTCGATCGAACTCCCTCTTCGAAGGCATTTGATGAAGACACAGCTATCTTCATCAATATGTCACAAGAGCTCAAAGAAGAGGGTAACAGGCTATACCAAAAGAAGGACCATGAAGGCGCTATGTTGAAATTTGAGAAGGCACTCAAACTACTTCCTCGGAACCACATTGATGTTGCTCATCTCCATAACAGTATGGCTGCGTGTTACATGCAGTTGGGTCTTGGTGAGTACCCCCGAGCCATCAACGAATGCAATTTAGCCTTGGAAATATCACCTAGATATAGTAAAGCACTATTGAGAAAAGCAAAGTGCTACGAGGCATTGAACAGATTGGATTTGGCCCTGAGAGATGTGAAATTTGTTTTGAGTATAGAGCCAAATAATGTCACTGCACTGGAGACTATGGATAGTTTGAAAAGGACGATGGAAGAGAAAGGTATTGCTGTTGATGACAATGAAATCAGTATACCTACACTCGAGCAGGCTCCTGCTTCCCGTATGCATAAAGTGGTGAAACAAAAAGTTAAGAAGAAGAAAGGCAAGAAATCTGAAGAGAAGTCTCAGGATAAGGTGGTTGTGGAGGATAATCTGAATGTTGTACAAGATAAAGTGATGGTCAAAAAGACAATTGAGGAAGAAAAGAAGGTCGTGGAACCTGTAAAGGAAGAAAAGGTAGTCACAAAGACAGTAAAATTGGTGTTTGGTGAGGATATAAGGTGGGCACAGTTACCAGTGAATTGTACTGTGGGCTTGGTGAGGGATATAGTAAGAGACCGCTTTACTGGATTGAAAGGTGTGCTTATTAAGTACAGGGATCAAGAGGGCGATCTGGTTACTCTCACTACCACTGCTGAACTTAGGTTGGCTGAATCTTCAGCTGACCTCCAGGGCTCCCTTCGTCTGTATATTGCTGAAACCAGTCCAGATCAAGAGCCTACTTATGACGGTGCATTCAATGAGGAAGTAAAGGGGAAGAATGATAAAAGGGAAGGTGATGTCACTGAAAATGGGCACGAGGGAATAGAGAGGGGCACATCAAAGGAGTTGACTTGTATCGAGGACTGGATTGTCCAATTTGCAAGGCTGTTCAAGAACCATGTTGGATTTGATTCTGATTCATATTTAGATCTTCACGAACTGGGGATGAAACTCTATTCAGAAGCTATGGAGGACACTGTCTCATGTGATGATGCTCAACAACTTTTTGATATTGCTGCAGATAAGTTTCAAGAGATGGCAGCATTGGCTATATTTAATTGGGGGAATGTTCACATGTCCAGGGCAAGGAAGAGTTTTTCCTTTCCCGAGGATGGGTTGGGGGAATTTGCTCTGGAACACCTCAAGGCTGCGTATGAGTGGGCGCAAAAGGAGTACACAATGGCAGAAAAGAGATATGAAGAAGCCTTGAAAATCAAACCAGACTTCTATGAAGGTTATCTTGCACTTGGGCATCAACAGTATGAGCAAGCGAAACTTTGTTGGTACTATTCACGTATAAACAATAAAGATCTGCATATAGAAGATGCTGCTGCGGCAGAGGTCCTTCAGCTCTACAACAAGGCTGAGGACAGCATGGAGAAAGGCATGCTAATGTGGGAGGAGATAGAGGAGAAGCATCTTAATGGACTTTCTAAGTTTGATAAATACAAGTCTCAGCTGGAGAAAATAGGATTAGATGGTCTATTGATGGATGTTCCTGCTGATGAAGTTTCAGAGCATGCTTCAAACATGAGATCTCAAATATATATTTTATGGGGTAAACTTCTATATGAGCGCTCCATCGTTGAATACAAGTTAAGCCTACCAACATGGGAAGAATGTTTAGAAGTTGCAGTGGAGAAGTTTGAACTTGCTGGGGCTTCTCCTACAGATATAGCTGTTATGATGAAGAATCATTGTTCCAATGGAACTGCTCTCGAAGGTTTAGGATTTAATATTGATGAGATAGTACAGGCATGGCATGAGATGTATGATGCTCAGAGGTGGCAGTTTAGCAACCCTTCTTTTAGGCTGGAACCATTATTTCGCCGGCGTGTCCCAAAACTACATCATATCTTGGAACATTTTTCTGTTATTTCTTAA 2178 0.4238 MGKPAGKRKDQVAQKSTHANANATAKPCKSSALDRTPSSKAFDEDTAIFINMSQELKEEGNRLYQKKDHEGAMLKFEKALKLLPRNHIDVAHLHNSMAACYMQLGLGEYPRAINECNLALEISPRYSKALLRKAKCYEALNRLDLALRDVKFVLSIEPNNVTALETMDSLKRTMEEKGIAVDDNEISIPTLEQAPASRMHKVVKQKVKKKKGKKSEEKSQDKVVVEDNLNVVQDKVMVKKTIEEEKKVVEPVKEEKVVTKTVKLVFGEDIRWAQLPVNCTVGLVRDIVRDRFTGLKGVLIKYRDQEGDLVTLTTTAELRLAESSADLQGSLRLYIAETSPDQEPTYDGAFNEEVKGKNDKREGDVTENGHEGIERGTSKELTCIEDWIVQFARLFKNHVGFDSDSYLDLHELGMKLYSEAMEDTVSCDDAQQLFDIAADKFQEMAALAIFNWGNVHMSRARKSFSFPEDGLGEFALEHLKAAYEWAQKEYTMAEKRYEEALKIKPDFYEGYLALGHQQYEQAKLCWYYSRINNKDLHIEDAAAAEVLQLYNKAEDSMEKGMLMWEEIEEKHLNGLSKFDKYKSQLEKIGLDGLLMDVPADEVSEHASNMRSQIYILWGKLLYERSIVEYKLSLPTWEECLEVAVEKFELAGASPTDIAVMMKNHCSNGTALEGLGFNIDEIVQAWHEMYDAQRWQFSNPSFRLEPLFRRRVPKLHHILEHFSVIS* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01448 725 SMART tpr_5 127 160 IPR019734 GO:0005515
Pte17g01448 725 SMART tpr_5 91 126 IPR019734 GO:0005515
Pte17g01448 725 SMART tpr_5 474 507 IPR019734 GO:0005515
Pte17g01448 725 SMART tpr_5 53 86 IPR019734 GO:0005515
Pte17g01448 725 ProSiteProfiles TPR repeat profile. 53 86 IPR019734 GO:0005515
Pte17g01448 725 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515
Pte17g01448 725 SMART PB1_new 259 338 IPR000270 GO:0005515
Pte17g01448 725 MobiDBLite consensus disorder prediction 15 37 - -
Pte17g01448 725 MobiDBLite consensus disorder prediction 1 39 - -
Pte17g01448 725 ProSiteProfiles PB1 domain profile. 259 338 IPR000270 GO:0005515
Pte17g01448 725 SUPERFAMILY TPR-like 42 172 IPR011990 GO:0005515
Pte17g01448 725 CDD PB1 261 335 - -
Pte17g01448 725 Coils Coil 476 496 - -
Pte17g01448 725 Gene3D Tetratricopeptide repeat domain 51 182 IPR011990 GO:0005515
Pte17g01448 725 Pfam PB1 domain 260 336 IPR000270 GO:0005515
Pte17g01448 725 SUPERFAMILY TPR-like 417 522 IPR011990 GO:0005515
Pte17g01448 725 PANTHER PROTEIN CLMP1 1 720 IPR044517 -
Pte17g01448 725 SUPERFAMILY CAD & PB1 domains 258 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01448 Pte-Chr17 29013885 29018558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01448 41 176 Calmodulin-binding Proteins AT3G25230 33.108 8.60e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01448 K26538 - qsa:O6P43_015720 1027.31