Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01438 ATGGAAAATCTTGGAAAAGAAGGAACCCTTCCCGATAAGCCAAGCATCCTGGCTTGTATTGTTGCTCCTCCATGTGTCAACGCACCATTGCAGAATCCTGCAGAGAAGAAGCAGAAGCTTGTTGAAGAGGATGAAGAAGAAAAGGAGCAACAGAAGGAGGAAAAGCAAGTTTCGTTGTTAGATCTGAACATTTCTTGTGATGTAGGGACCAGGAGTTGTGATCTCAATCTGAATCTGTCGACAACAATTTCATCCGAAACCCCTCAAGCTTCTGCAGATGAACCCCGGTTTTTCTCTTGCAACTATTGCCACAGAAAGTTTTATAGTTCACAGGCACTGGGAGGACATCAAAATGCTCACAAGCGAGAGAGGACTTTAGCAAGAAGAGGACAGAAGTTAGGAGCACAGATGATGGCTTCTGCAGCTGCTTTTGGACTCCATCCTTTTCTGCATGGTGAAGGCGATTCAAGCTTGGCTTCTTTACCTTTATATGGTGTCTGTCATAGACCTCTGGGAATTCAAGCTCACTCGATGATCCATAAGCCTTGTTACACTTCTAACAGTGCAGGTTTTGGAATTGCGTACAGGCAGCGACCCATGATCGAGCAACAACCAGGAATAGGGAAGCTAGCAACAGCTGGAAATTTTCACAAAACAACGCTATCTTCACTGGGTAGCGTAGGTAGATTTCCCATGGAGCATACATGGTTCACTTCCCAAATTGAAGATCAAATGGGCGGGTATGGCGATGTTAGAACTCAGCTGAAGGCCAATCAGGAAGAGATGAAGCCGCTTGATCTGTCACTCCGGCTTTGA 816 0.4559 MENLGKEGTLPDKPSILACIVAPPCVNAPLQNPAEKKQKLVEEDEEEKEQQKEEKQVSLLDLNISCDVGTRSCDLNLNLSTTISSETPQASADEPRFFSCNYCHRKFYSSQALGGHQNAHKRERTLARRGQKLGAQMMASAAAFGLHPFLHGEGDSSLASLPLYGVCHRPLGIQAHSMIHKPCYTSNSAGFGIAYRQRPMIEQQPGIGKLATAGNFHKTTLSSLGSVGRFPMEHTWFTSQIEDQMGGYGDVRTQLKANQEEMKPLDLSLRL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01438 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Pte17g01438 271 MobiDBLite consensus disorder prediction 36 54 - -
Pte17g01438 271 Coils Coil 34 61 - -
Pte17g01438 271 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Pte17g01438 271 MobiDBLite consensus disorder prediction 28 54 - -
Pte17g01438 271 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Pte17g01438 271 Gene3D Classic Zinc Finger 71 144 - -
Pte17g01438 271 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 31 271 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01438 Pte-Chr17 28916941 28918361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01438 41 272 C2H2 Transcription Factor Family AT5G10970 40.000 1.34e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte17g01438 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01438 - - qsu:112003164 217.624