Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01436 ATGCCAGACATGGATGGATTCAAGCTCCTTGAGCTTGTGGGACTTGAAATGGACCTACCTGTCATTATGTTGTCTGCAAATGGTGATACCAAGCTCGTAATGCAAGGAGTTACTCATGGAGCTTGTGATTATCTGGTGAAACCTGTTCGGATCGAAGAGCTGAAGAACATCTGGCAGCATGTAATCAGGAGAAAGAATTTTGATACTAAGGATCAAAGTGGCGCTGGAAATCAAGATAAACCTCATGAAGTCAATAGATTAAGCGGCCAAGTTTCTGGAGGGACAGGTGATTCAGAACAGAATGGAAAGGCCATCAAAAGAAGGAAGGATCAAAATGAAGATGAGGATGAGGAGCAGGAGAATGGACATGATAATGACGAAACAACAACACAGAAGAAACCTCGCGTTGTTTGGTCTGTGGAGCTACATCACAAGTTTGTTGCCGCAGTTCGTCAGTTAGGCATTGACAAAGCCGTACCTAAGAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACCAGGGAGAATGTGGCAAGCCATCTGCAGAAGTACAGGCTTTATCTGAAAAGAATTAGCTGTCAGCAGAACCAAGCCAATATGGTGGCAGCTTTAAGTGGTGCAGATCCTTCCTATTTGAGCATGGGGTCTCTGAATGGACTGGGGCCTCTGCATAATATGACTGGATCCGGGCATTTCCAAAATTCCATTTCCGGATCCTTCTCACCCGTTGGCATGCTTGGGAGACTGAACACTTCATCTGGCCTGGGTATACATGGCCTTCCATCTCCAGGGCTTGTACAACTGGGTCAATCAAAAAATTTGAACAACTTGATGACGGAGCAAATTAAGTTTCAAAAAGTCCTTCCGAGAAATCTTGATGGCAGTATGATTCAGGGCACACCGGTGTCATTGGAGCTTGATCAACTACATCAGAATGGGGGTGTCACTTGTGCCGATGACCTTCAGTTGGCTGTTGATAATCATATGGTTTTCACAAACTGCTTCCCAGATTCAAAAGGAGCCATAAATTCATGCAATCCACTACTTAGTTCTACAAATAATACATCGATGTTAGATTCTCAAGAAACGCGAGTCGGAAAAACATATGAGAATCGTTCTGCTGCTTTAGTAGGTTCGCTACATTCTGAATTTTCTTCACCTATGCTAGATCCTATTCCTGGCAGATGTAATGAAGGTTGGTCAAGTGCAATTCAGTCATCAACATCAAGTAATTGTTTCAGACCAGCCACAATGCATTTGCAAGATAACTTATCTTCGATGCCCTTCGAAATTGGAAACGCTCAATTTCAGGATTCAATGAGGGAAATGAACTACCACCAGGTAAGATCTGCTCCACACATACTGACTAATGCCCCAAAGCAAGAGTGGGATGATCATGAAGGGGGTGTCCTATACAATTCAAATGTATTGGGTAGGTCAGTGAACTTTGACAGTCCTGCAAATGGTGGTTTTTATCAATTAAACCAGAATGCAGATCCCAAAAACTCAAGCTTCAACGTCAACAGATCGAATTTTGATGTATCGTTACACATGAACACTGATTATGTCAGGAAATCAATTAGGGAGACAACGATGTCATTGAATCAGGGTTATAACATGGACCAATACAAGGCACAACATGGTTGCAATTCCAATAATTCTGGGTCATTGGAAGACTTGGCGACCTCAATGATGAAACAGGAGCAAGATAAGGTGAATCCAATGGGAGAGGACTTCGGATGTGATATTTACTCGATCGAGTCATGCATGTGA 1773 0.427 MPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMQGVTHGACDYLVKPVRIEELKNIWQHVIRRKNFDTKDQSGAGNQDKPHEVNRLSGQVSGGTGDSEQNGKAIKRRKDQNEDEDEEQENGHDNDETTTQKKPRVVWSVELHHKFVAAVRQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCQQNQANMVAALSGADPSYLSMGSLNGLGPLHNMTGSGHFQNSISGSFSPVGMLGRLNTSSGLGIHGLPSPGLVQLGQSKNLNNLMTEQIKFQKVLPRNLDGSMIQGTPVSLELDQLHQNGGVTCADDLQLAVDNHMVFTNCFPDSKGAINSCNPLLSSTNNTSMLDSQETRVGKTYENRSAALVGSLHSEFSSPMLDPIPGRCNEGWSSAIQSSTSSNCFRPATMHLQDNLSSMPFEIGNAQFQDSMREMNYHQVRSAPHILTNAPKQEWDDHEGGVLYNSNVLGRSVNFDSPANGGFYQLNQNADPKNSSFNVNRSNFDVSLHMNTDYVRKSIRETTMSLNQGYNMDQYKAQHGCNSNNSGSLEDLATSMMKQEQDKVNPMGEDFGCDIYSIESCM* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01436 590 Gene3D - 129 192 - -
Pte17g01436 590 CDD REC_typeB_ARR-like 1 62 - -
Pte17g01436 590 MobiDBLite consensus disorder prediction 69 132 - -
Pte17g01436 590 SUPERFAMILY Homeodomain-like 130 190 IPR009057 -
Pte17g01436 590 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 186 IPR006447 GO:0003677
Pte17g01436 590 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 189 IPR017930 -
Pte17g01436 590 Pfam Response regulator receiver domain 1 56 IPR001789 GO:0000160
Pte17g01436 590 MobiDBLite consensus disorder prediction 83 99 - -
Pte17g01436 590 Pfam Myb-like DNA-binding domain 135 185 IPR001005 -
Pte17g01436 590 Gene3D - 1 83 - -
Pte17g01436 590 PIRSF RR_ARR_type-B 1 590 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pte17g01436 590 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 179 IPR045279 GO:0009736
Pte17g01436 590 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Pte17g01436 590 FunFam Two-component response regulator 129 192 - -
Pte17g01436 590 SUPERFAMILY CheY-like 1 67 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01436 Pte-Chr17 28904001 28909105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01436 1 591 Response Regulator Gene Family AT2G25180 38.412 7.69e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte17g01436 Response_reg 2.8e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01436 K14491 - qsu:111995737 586.26