Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01434 ATGAGCAGCCTGGTTGAGAGGCTACGAGTGAGATCAGAGCGTAAGCCAATATACAATCTCGACGAATTGGATGATGATGCTGACTTTTTACCTGGGAAACAAACAGCTAGACAGGAAAAACTTGAGAGGATAGATAGAACTGATGCGAAAGAGAATTTATGTCAAGCATGTGGAGAAGATGGGGATCTTCTGAGCTGTGAAACATGTACATACTCATACCACACCAAGTGCTTACTTCCACCTGCCAAAGCTCCTCAACTTGGCAACTGGAGGTGCCCTGAATGTGTTAGCCCTCTTAATGATATTGAAAAAATTCTGGAGTGTGAAATGCGGCCAACTGTGGCCGATGGTGATGCATCAAAGCTGGGCTCAAAGCAAATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGACTATCGTATCTACATTGCTCATGGGTGCCCGATAAAGAGTTTCTTAAAGCTTTTAAGACAAATCCTCGTCTGAAGATGAAAGTAAATAATTTCCAGCGTCAGATGTCATCTCTCAATAACTCTGACGAAGACTTTGTTGCCATTCGACCTGAATGGACTACAGTTGATCGCATAATTGCCTGCAGGGGGGAAAATGGTGATAAGGAATACCTTGTGAAGTGGAAGGAACTTCCCTATGATGAGTGTCACTGGGAACATGAATCTGATATATCTGCGTTCCAGCCTGAAATTGAGAAGTTCAACAGGATTCAGTCTAGGTCTAAGAAATTTTCCTCTAACAAGAATAGAGGGAGTTTAGAAAATGATGTTGAATCCAGAAAGCCACAGAAAGAGTTTCAACAATTTGAACATAGCCCTGAATTTCTTTCTGGTTCATTGCACCCATATCAACTTGAGGGTTTGAACTTTCTGCGATTTTCTTGGTCAAAACAAACTCATGTCATTCTTGCTGACGAAATGGGGCTTGGGAAAACCATACAGAGCATTGCTTTTTTAGCTTCTCTTTTTGAGGAAGGGATTTCACCGCATCTGGTTGTTGCTCCATTGTCAACACTACGCAATTGGGAACGTGAATTTGCAACGTGGGCACCTCAAATGAATGTTGTTATGTACGTTGGATCTTCCCAAGCACGTGCTTTTATAAGAGAGCATGAGTTCTACTTCCCCAAGAATCAGAAGAAAATCAAGAAAAAAAAATCTGGTCAAATAGTTAGTGAAAGGAAGAAAGACAGGACAAAATTTGATGTCCTTCTGACATCTTATGAGATGATAAACTTGGACACAGCATCCTTGAAGCCAATACAGTGGGAATGCATGATAGTTGACGAGGGTCATCGCCTAAAGAATAAAGATTCAAAGCTCTTTTCATCTTTGAAGCAGTATGTTACTAGACATCGTGTACTTTTGACTGGAACTCCTCTTCAGAATAACCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGCAAGTTTGGAAGTTTGGAGGAGTTCCAGGAAGAATTCAAGGACATCAATCAGGAAGAGCAGATATCAAGGCTTCACAAGATGTTGGCTCCCCACCTCTTGAGAAGGGTAAAGAAAGATGTAATGAAGGATCTGCCTCCTAAAAAGGAACTCATTTTGCGTGTTGAATTAAGCAGCAAGCAGAAAGAATTATACAAGGCAATTTTAACCCGCAACTATCAGATTTTGACTCGTCGTGGTGGCGCACAGATTTCGCTTATCAATGTTGTCATGGAATTAAGGAAGCTTTGTTGCCATCCGTACATGTTAGAGGGTGTAGAACCAGATATTGAAGATGCAAAAGAGTCCTTCAAACAGCTATTGGAATCATCTGGGAAAATGCAGTTGTTAGACAAAATGATGGTAAAACTTAAAGAGCAAGGGCATAGAGTCCTTATTTACACACAGTTTCAGCGCATGCTTGACTTGCTTGAAGATTACTGTGCTTACAAGAATTGGTATTACGAGAGGATCGATGGGAAAGTCGGTGGAGCTGAAAGACAGATACGTATAGATAGGTTCAATGCCAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCGACCAGAGCTGGGGGTTTAGGGATAAATCTTGCAACAGCTGACACAGTTATTATCTATGACAGTGATTGGAACCCTCATGCTGATCTACAAGCAATGGCGAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATCGGCTCGTAACACGAGGGACCATTGAGGAAAGGATGATGCAAATGACCAAGAAGAAAATGGTGTTAGAGCATCTTGTTGTGGGCAAGCTAAAGACTCAAAACATTAACCAGGAAGAGTTGGATGATATCATAAGGTATGGCTCCAAAGAGCTGTTCGCGGATGAGAATGACGAGACAGGAAAATCTCGCCAAATCCATTATGATGACGTGGCAATAGATAGATTGCTGGATCGCGAACATGTTGGAGTTGAAGAATCCACTTTGGACGACGAAGATGAAAACGGATTCCTGAAGGCCTTCAAGGTTGCTAATTTTGAATATATTGAAGAAGTGGAGATTGCAGCAGAGGAGGACGTGGCTACTGATGAAAAAACTACCATGAATAATTCAGAACGAACAAATTACTGGGACGACTTGCTGAAAGACAAGTATGAAGAACATAAAGTTGAAGAGTTCAATGCTTTGGGCAAAGGAAAGAGAAGTCGCAAGCAGATGGTATCTGTTGACGATGACGACCTTGCTGGTCTTGAAGATGCAAGTTCTGATGGTGAGGGTGACAATTATGAAGCAGAAACTGATGGTGAGACAAACTCTGGTGGACCTGCGTCTGTGAAAAGGCCGTACAAAAAGAAAGCTCGTGCTGATACTGCAGAACCACTTCCCTTGATGGAAGGTGAGGGAAAATCATTCAGAGTACTTGGCTTCAATCAAAACCAAAGAGCTACCTTCGTACAAATATTAATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAATTTGTCTCACGCATGAAACAGAAGACTTTCGAAGAAATCAGAGATTATGGAACTTTGTTCTTGTCTCATATTGCAGAGGAAATAACTGAATCCCCTACATTTTCAGATGGTGTCCCTAAGGAAGGACTCAGAATTCAAGATGTCCTTGTGAGAATCGCAGAGCTGCTCCTCATTAGGGACAAAGTGAAGTTCGCATTAGAGAATCCTGGGACTCCACTTTTTCCAAATGACATTTTATCAAGATACCCAGGTTTAAAAGGTGGAAGAATCTGGAAGGAGGAGCTCGATTTAACATTATTGCGTGCTGTATTAAAGCACGGCTATGGAAGGTGGCAAGCAATTGTTGATGACAAAGATCTGAAGATTCAGGAAGTCATCTGTCAAGAGTTAAACCTCCCTTTTATTACCTTACCAGTACCAGGACAACCTTGTTCTCAAGCTCAGAATACAGGAGTTTCCTCTACTGCAGAAGCTCCAAACAATCAATCTGCGGGAAATGGAGGGAATAGTGTACCTTCTGATGATGCGAAAGGGACTCCCGATGCTACAAATCAGGCACAGTTATATCAAGACTCTTCTATGTTGTACCATTTTAGAGATATGCAGCGAAGACAGGTTGAGTTTGTTAAAAAAAGGGTCCTGCTTCTTGAAAAAGGGCTCAATGCTCAGTACCAAAAAGAATATTTTGGTGATATGAAGGAAAATGAAGTCACGAATGATGAGGTTGAGAACGAACCTAAGGTTGTAAATGAGGGACATCATAAATCAGGGGAGACTCATACTCAAATTGTTGATCAAATGCCTCCACTGGAAAGAATAGGTTCAGGAGAATTATCGGCAGCATCCTTTGATCAAAATCCAGAACGTTTGGAACTGGGTCGGCTTTATAATGAGATATGTGATGCCCATGAATCTCTTAGAAACGCTAGGGCTGATGAATCAGCTGGGGTTGACTTGAGCAAGAAATTACACCGACTGGAAACCGCTTGTGAAGACATTGACCAAATTCTAGGTCCTGCAGAGCAGAAATCAGAGAAGTCAAATCAAGAACAAAAAACTGACGCCCTATTATCACAAAGTGAGACATTGAAGCATGCAGCAATGGAATGGGAGCCTTATGAAATGGAAAGGTCAGACCCGGTAAAGGGTGAAAGTGAAACCACCCTCAAAACCGAACCTTCCTCAAATTCACATCATCCAAATGCTAATGTTGAGGATGATGGATCAAATGTAACCACACAAAAAACAGGGATCGTCATTTTGGATGACTAA 4233 0.4146 MSSLVERLRVRSERKPIYNLDELDDDADFLPGKQTARQEKLERIDRTDAKENLCQACGEDGDLLSCETCTYSYHTKCLLPPAKAPQLGNWRCPECVSPLNDIEKILECEMRPTVADGDASKLGSKQIFVKQYLVKWKGLSYLHCSWVPDKEFLKAFKTNPRLKMKVNNFQRQMSSLNNSDEDFVAIRPEWTTVDRIIACRGENGDKEYLVKWKELPYDECHWEHESDISAFQPEIEKFNRIQSRSKKFSSNKNRGSLENDVESRKPQKEFQQFEHSPEFLSGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAFIREHEFYFPKNQKKIKKKKSGQIVSERKKDRTKFDVLLTSYEMINLDTASLKPIQWECMIVDEGHRLKNKDSKLFSSLKQYVTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDLPPKKELILRVELSSKQKELYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDAKESFKQLLESSGKMQLLDKMMVKLKEQGHRVLIYTQFQRMLDLLEDYCAYKNWYYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFADENDETGKSRQIHYDDVAIDRLLDREHVGVEESTLDDEDENGFLKAFKVANFEYIEEVEIAAEEDVATDEKTTMNNSERTNYWDDLLKDKYEEHKVEEFNALGKGKRSRKQMVSVDDDDLAGLEDASSDGEGDNYEAETDGETNSGGPASVKRPYKKKARADTAEPLPLMEGEGKSFRVLGFNQNQRATFVQILMRFGVGDFDWKEFVSRMKQKTFEEIRDYGTLFLSHIAEEITESPTFSDGVPKEGLRIQDVLVRIAELLLIRDKVKFALENPGTPLFPNDILSRYPGLKGGRIWKEELDLTLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFITLPVPGQPCSQAQNTGVSSTAEAPNNQSAGNGGNSVPSDDAKGTPDATNQAQLYQDSSMLYHFRDMQRRQVEFVKKRVLLLEKGLNAQYQKEYFGDMKENEVTNDEVENEPKVVNEGHHKSGETHTQIVDQMPPLERIGSGELSAASFDQNPERLELGRLYNEICDAHESLRNARADESAGVDLSKKLHRLETACEDIDQILGPAEQKSEKSNQEQKTDALLSQSETLKHAAMEWEPYEMERSDPVKGESETTLKTEPSSNSHHPNANVEDDGSNVTTQKTGIVILDD* 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01434 1410 Gene3D - 180 240 - -
Pte17g01434 1410 SMART chromo_7 99 161 IPR000953 -
Pte17g01434 1410 SMART chromo_7 189 243 IPR000953 -
Pte17g01434 1410 Pfam Helicase conserved C-terminal domain 607 720 IPR001650 -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 1355 1410 - -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 888 945 - -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 1374 1404 - -
Pte17g01434 1410 SUPERFAMILY Chromo domain-like 176 245 IPR016197 -
Pte17g01434 1410 CDD CD1_tandem 98 171 - -
Pte17g01434 1410 Pfam CHD subfamily II, DUF1087 845 900 IPR009463 -
Pte17g01434 1410 SMART ultradead3 280 493 IPR014001 -
Pte17g01434 1410 SMART DUF1086_2 908 1066 IPR009462 GO:0003677|GO:0006338
Pte17g01434 1410 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Pte17g01434 1410 Gene3D - 1033 1201 - -
Pte17g01434 1410 ProSiteProfiles Chromo and chromo shadow domain profile. 191 250 IPR000953 -
Pte17g01434 1410 CDD SF2_C_SNF 605 731 - -
Pte17g01434 1410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 103 IPR013083 -
Pte17g01434 1410 ProSiteProfiles Chromo and chromo shadow domain profile. 100 181 IPR000953 -
Pte17g01434 1410 Gene3D - 281 526 IPR038718 -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 245 268 - -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 1355 1373 - -
Pte17g01434 1410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 482 IPR014001 -
Pte17g01434 1410 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 47 1373 - -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 251 268 - -
Pte17g01434 1410 SMART helicmild6 636 720 IPR001650 -
Pte17g01434 1410 Pfam SNF2-related domain 304 584 IPR000330 GO:0005524|GO:0140658
Pte17g01434 1410 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 899 919 - -
Pte17g01434 1410 Pfam Chromo (CHRromatin Organisation MOdifier) domain 116 155 IPR023780 -
Pte17g01434 1410 Pfam Chromo (CHRromatin Organisation MOdifier) domain 192 239 IPR023780 -
Pte17g01434 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 778 IPR027417 -
Pte17g01434 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 517 IPR027417 -
Pte17g01434 1410 SUPERFAMILY Chromo domain-like 66 175 IPR016197 -
Pte17g01434 1410 Gene3D - 527 751 IPR027417 -
Pte17g01434 1410 CDD CD2_tandem 189 240 - -
Pte17g01434 1410 Pfam PHD-finger 54 96 IPR019787 -
Pte17g01434 1410 MobiDBLite consensus disorder prediction 1132 1169 - -
Pte17g01434 1410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 610 771 IPR001650 -
Pte17g01434 1410 SMART PHD_3 53 96 IPR001965 -
Pte17g01434 1410 Pfam CHD subfamily II, SANT-like domain 930 1063 IPR009462 GO:0003677|GO:0006338
Pte17g01434 1410 Gene3D - 104 174 - -
Pte17g01434 1410 SMART DUF1087_2 837 903 IPR009463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01434 Pte-Chr17 28877358 28893097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01434 306 781 RAD5 or RAD16-like Gene Family AT1G02670 22.744 1.84e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte17g01434 SNF2_N 2.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01434 K11643 - cave:132190620 2149.01