Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01408 ATGGCTTCCAAGCTCTGTGACTCATGCAAATCCGCCACCGCAACATTGTTTTGTCGAGCTGATGCTGCTTTCCTCTGTGTGGGTTGCGATTCCAAAGTTCATGCAGCAAATAAGCTTGCCTCTCGGCACGCGCGCGTTTGGATTTGCGAGGTCTGTGAGCAAGCTCCGGCACACGTCACTTGCAAGGCGGATGCAGCAGCTCTCTGCGTCACATGCGATCGTGACATCCACTCTGCCAACCCTCTAGCCCGCCGTCACGAACGCGTTCCTGTGACTCCATTCTTCGACACTGTCAACTCCGTTGGAGTGAAGTCCGGAACCGTCGTGAACTTTCTCGAGGACCGTTACTTGAACGAGGCCGATCAAGATGCTGATGTTAGCAGCGAGGAGGCTGAGGCGGCCTCATGGCTGCTTCCGAATCCCAAACCGGTCGAAAGCCCGGAACTGAACTCTGGTCAGTATGTGTTCCCGGAAATGGACCGGTACCTGGATCTAGATTACGGGCATGTGGATCCAAAAGTGGAAGCGCAGGAGCAGAACAGCTCCGGTGCCGATGGTGTGGTTCCGGTTCAAAGCAAGAGTCCACCAGCTCCATCTTCAGTAAACGTACACTTCTTCGACATGGATTTCAGTGGCTCCAAGCCCTTTCCCTATTTCTACAACGGCCAGTGCCTGAGCCAAAGTGTATCATCGTCGTCCTTGGAAGTAGGGGTAGTGCCAGATGGGAACACCATGTCAGACATGTCGACCTGTTACGGCAAGCCTATGAGTACGGCAGTGGATTCAGCGATTCAGACGGTGCAGATCTCAACGGCAGATAGAGAAGCTAGAGTGTTGAGGTACAGGGAGAAGAGAAAGAACCGGAAATTCGAGAAGACGATTCGGTATGCTTCGCGTAAGGCTTACGCCGAAACGAGGCCGCGAATCAAAGGAAGGTTCGCAAAACGTTCCGATGTAGAAGTAGATGTGGACGGCTTCGGTGGGTATGGCGTCGTACCTTCCTACTAA 1008 0.5347 MASKLCDSCKSATATLFCRADAAFLCVGCDSKVHAANKLASRHARVWICEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFFDTVNSVGVKSGTVVNFLEDRYLNEADQDADVSSEEAEAASWLLPNPKPVESPELNSGQYVFPEMDRYLDLDYGHVDPKVEAQEQNSSGADGVVPVQSKSPPAPSSVNVHFFDMDFSGSKPFPYFYNGQCLSQSVSSSSLEVGVVPDGNTMSDMSTCYGKPMSTAVDSAIQTVQISTADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDVEVDVDGFGGYGVVPSY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01408 335 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Pte17g01408 335 CDD Bbox1_BBX-like 5 48 - -
Pte17g01408 335 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Pte17g01408 335 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 319 IPR045281 GO:0009909
Pte17g01408 335 Pfam CCT motif 274 316 IPR010402 GO:0005515
Pte17g01408 335 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Pte17g01408 335 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Pte17g01408 335 ProSiteProfiles CCT domain profile. 274 316 IPR010402 GO:0005515
Pte17g01408 335 SMART bboxneu5 49 91 IPR000315 GO:0008270
Pte17g01408 335 SMART bboxneu5 1 48 IPR000315 GO:0008270
Pte17g01408 335 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01408 Pte-Chr17 28705927 28708734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01408 1 336 C2C2-CO-like Transcription Factor Family AT5G24930 64.835 1.70e-147 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte17g01408 zf-B_box 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01408 - - qsa:O6P43_015805 509.605